Os08g0388900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGT-1.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0388900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to PGT-1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.96 | 0.332 | 7.11 | 1.87 | 0.521 | -1.36 | -0.039 | 3.78 | 0.388 | 3.95 | 23.42 | 1311 | -- | -- |
| 55.31 | 0.346 | 7.19 | 0.964 | 0.421 | -1.05 | 0.283 | -- | 0.273 | 3.4 | 22.3 | 7938 | -- | -- |
| 49.94 | 0.329 | 7.11 | 1.86 | 0.51 | -1.33 | -- | 3.62 | 0.396 | 4.05 | 23.19 | 1337 | -- | -- |
| 54.63 | 0.344 | 7.18 | 1.22 | 0.461 | -1.36 | -- | -- | 0.383 | 4.14 | 16.81 | 9779 | -- | -- |
| 54.48 | 0.344 | 7.12 | 1.91 | -- | -1.52 | -- | 4.39 | 0.344 | -- | 24.48 | 1815 | -- | -- |
| 93.73 | 0.454 | 7.28 | 0.442 | 0.397 | -- | -0.035 | -- | -0.104 | 4.71 | -- | -- | -- | -- |
| 93.74 | 0.453 | 7.28 | 0.442 | 0.397 | -- | -- | -- | -0.104 | 4.71 | -- | -- | -- | -- |
| 63.55 | 0.371 | 7.18 | 1.25 | -- | -1.41 | -- | -- | 0.376 | -- | 16.2 | 9113 | -- | -- |
| 71.74 | 0.394 | 7.25 | -- | 0.389 | -0.81 | -- | -- | 0.0621 | 3.91 | 26.38 | 7776 | -- | -- |
| 102.09 | 0.472 | 7.28 | 0.457 | -- | -- | -- | -- | -0.0932 | -- | -- | -- | -- | -- |
| 98.88 | 0.465 | 7.29 | -- | 0.405 | -- | -- | -- | -0.153 | 4.68 | -- | -- | -- | -- |
| 79.8 | 0.416 | 7.25 | -- | -- | -0.811 | -- | -- | 0.0661 | -- | 26.5 | 7701 | -- | -- |
| 107.59 | 0.484 | 7.3 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 5 | 47.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 6 | 47.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 9 | 47.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 12 | 48.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 23 | 48.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 24 | 48.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 33 | 49.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 55 | 49.49 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 74 | 49.64 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 87 | 49.71 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 88 | 49.71 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 114 | 49.87 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 130 | 49.93 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 152 | 50.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 167 | 50.06 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 172 | 50.07 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 189 | 50.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 192 | 50.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 224 | 50.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 228 | 50.24 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 284 | 50.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 285 | 50.40 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 292 | 50.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 299 | 50.43 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 306 | 50.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 307 | 50.44 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 328 | 50.50 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 331 | 50.51 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 336 | 50.52 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 346 | 50.57 | wind | 7 | 43200 | < th | dose independent | sin | 2 | NA |
| 352 | 50.60 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 380 | 50.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 384 | 50.74 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 389 | 50.77 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 397 | 50.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 406 | 50.86 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 408 | 50.87 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 409 | 50.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 428 | 50.93 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 447 | 51.01 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 451 | 51.02 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 453 | 51.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 455 | 51.04 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 486 | 51.11 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 496 | 51.13 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 520 | 51.17 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 538 | 51.20 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 546 | 51.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 581 | 51.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 633 | 51.39 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 653 | 51.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 664 | 51.42 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 688 | 51.45 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 698 | 51.46 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 724 | 51.49 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 756 | 51.52 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 773 | 51.52 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 786 | 51.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 797 | 51.56 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 838 | 51.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 924 | 51.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 951 | 51.72 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 18 |