Os08g0388300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0388300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.73 | 0.445 | 5.83 | -0.775 | 0.37 | 1.97 | 0.666 | -1.02 | 0.174 | 2.84 | 9.451 | 1346 | -- | -- |
| 90.58 | 0.443 | 5.8 | -0.557 | 0.371 | 1.95 | 0.564 | -- | 0.233 | 3 | 12.33 | 1336 | -- | -- |
| 90.38 | 0.443 | 5.82 | -0.711 | 0.372 | 2.01 | -- | -0.687 | 0.188 | 4.38 | 6.558 | 1263 | -- | -- |
| 90.75 | 0.444 | 5.8 | -0.562 | 0.365 | 2 | -- | -- | 0.228 | 4.65 | 14.2 | 1230 | -- | -- |
| 97.39 | 0.46 | 5.82 | -0.702 | -- | 2.1 | -- | -0.581 | 0.188 | -- | 5.858 | 1230 | -- | -- |
| 154.83 | 0.583 | 5.72 | 0.0582 | 0.524 | -- | 0.668 | -- | 0.588 | 2.89 | -- | -- | -- | -- |
| 155.96 | 0.585 | 5.72 | 0.0425 | 0.54 | -- | -- | -- | 0.583 | 3.47 | -- | -- | -- | -- |
| 97.67 | 0.46 | 5.81 | -0.576 | -- | 2.09 | -- | -- | 0.221 | -- | 4.146 | 1224 | -- | -- |
| 98 | 0.461 | 5.78 | -- | 0.375 | 1.78 | -- | -- | 0.325 | 4.73 | 13.17 | 1196 | -- | -- |
| 172.31 | 0.613 | 5.72 | 0.0653 | -- | -- | -- | -- | 0.598 | -- | -- | -- | -- | -- |
| 156.01 | 0.584 | 5.72 | -- | 0.541 | -- | -- | -- | 0.579 | 3.47 | -- | -- | -- | -- |
| 105.28 | 0.478 | 5.79 | -- | -- | 1.85 | -- | -- | 0.321 | -- | 14.8 | 1212 | -- | -- |
| 172.42 | 0.613 | 5.72 | -- | -- | -- | -- | -- | 0.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 7 | 86.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 32 | 88.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 48 | 89.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 50 | 89.27 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 53 | 89.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 80 | 89.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 86 | 89.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 120 | 90.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 133 | 90.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 171 | 90.15 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 219 | 90.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 269 | 90.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 287 | 90.36 | temperature | 15 | 1440 | > th | dose dependent | sin | 16 | NA |
| 519 | 91.11 | temperature | 10 | 1440 | > th | dose dependent | sin | 3 | NA |
| 565 | 91.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 706 | 91.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 778 | 91.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 784 | 91.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 831 | 91.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 832 | 91.88 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 836 | 91.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 900 | 92.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 911 | 92.02 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |