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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0387700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.92 (0.032) R2 : 0.642
β1 : 1.1 (0.119) R2dD : 0.0711 R2D : 0.0446
β2 : 1.59 (0.0854) R2dC : 0.287 R2C : 0.161
β3 : 1.44 (0.0911) R2dE : 0.227 R2E : 0.176
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.715 (0.0702) R2dN8 : 0.115 R2N8 : 0.123
σ : 0.595
deviance : 163.07
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C
peak time of C : 6.04
E
wheather : temperature
threshold : 20.1
memory length : 359
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.73
open length of G : 20.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.12 0.595 4.92 1.1 1.63 1.45 -1.11 0.117 0.722 6.12 19.8 323 9.83 20.3
160.16 0.589 4.92 1.09 1.64 1.44 -1.14 -- 0.727 6.1 19.82 327 9.82 20.3
162.39 0.594 4.91 1.14 1.6 1.51 -- 0.472 0.726 6.11 20.1 364 9.58 20.6
163.07 0.595 4.92 1.1 1.59 1.44 -- -- 0.715 6.04 20.1 359 9.73 20.6
199.66 0.658 4.94 1.01 -- 1.96 -- 0.0536 0.705 -- 20.4 713 14.4 17.5
227.51 0.707 4.88 1.46 1.42 -- -0.636 -- 0.979 4.38 -- -- -- --
228.56 0.708 4.88 1.46 1.41 -- -- -- 0.983 4.3 -- -- -- --
181.97 0.628 5.04 0.856 -- 2.21 -- -- 0.561 -- 20.2 861 14.4 14.6
184.72 0.633 4.97 -- 1.36 1.84 -- -- 0.51 5.33 20.6 1891 10.1 18.3
336.22 0.857 4.89 1.52 -- -- -- -- 1.02 -- -- -- -- --
285.1 0.79 4.91 -- 1.44 -- -- -- 0.82 4.28 -- -- -- --
198.55 0.656 5.01 -- -- 2.46 -- -- 0.512 -- 19.95 952 13.6 14.7
397.23 0.93 4.92 -- -- -- -- -- 0.851 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.57 temperature 20 270 > th dose independent rect. 10 21
2 162.81 temperature 20 270 > th dose independent rect. 11 19
12 168.74 temperature 20 270 > th dose independent rect. 22 8
28 173.25 temperature 20 720 > th dose independent rect. 18 11
35 173.70 temperature 20 4320 < th dose independent rect. 20 2
41 174.21 temperature 10 270 > th dose dependent rect. 9 22
46 174.48 temperature 15 720 > th dose dependent rect. 18 13
48 174.49 temperature 20 4320 > th dose independent rect. 18 5
50 174.55 temperature 20 4320 > th dose independent rect. 20 3
71 175.71 temperature 15 720 > th dose dependent rect. 19 11
94 176.75 temperature 20 720 > th dose independent sin 14 NA
133 177.79 temperature 10 720 > th dose dependent sin 11 NA
167 178.63 temperature 20 720 > th dose independent sin 12 NA
247 180.01 temperature 20 1440 < th dose independent rect. 18 10
249 180.01 temperature 25 720 < th dose dependent sin 13 NA
253 180.05 temperature 20 720 < th dose independent sin 14 NA
261 180.16 temperature 25 720 < th dose dependent rect. 16 15
272 180.32 temperature 20 1440 < th dose independent rect. 18 12
279 180.37 temperature 25 1440 < th dose dependent rect. 21 2
281 180.39 temperature 25 720 < th dose dependent rect. 17 12
315 180.61 temperature 25 1440 < th dose dependent rect. 21 4
356 180.83 temperature 25 1440 < th dose dependent rect. 18 9
384 180.95 temperature 20 270 > th dose independent rect. 21 22
417 181.10 temperature 15 10 > th dose dependent rect. 13 18
423 181.14 temperature 20 1440 > th dose independent rect. 23 1
457 181.31 temperature 15 90 > th dose dependent rect. 13 18
515 181.56 temperature 10 1440 > th dose dependent rect. 22 1
521 181.58 temperature 10 270 > th dose dependent rect. 1 15
542 181.63 temperature 20 270 < th dose independent rect. 18 16
565 181.71 temperature 15 1440 > th dose dependent rect. 21 6
636 181.87 temperature 20 270 > th dose independent rect. 23 23
726 182.07 wind 9 43200 > th dose dependent rect. 18 13
744 182.10 temperature 25 720 < th dose dependent rect. 6 21
967 182.47 temperature 25 1440 < th dose dependent rect. 1 1