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Os08g0386700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9 elicitor response protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.02 (0.0168) R2 : 0.722
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.47 (0.0426) R2dC : 0.727 R2C : 0.722
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0181 (0.0353) R2dN8 : 0.000206 R2N8 : -0.00444
σ : 0.317
deviance : 45.81
__
_____
C
peak time of C : 8.32
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.94 0.301 9.04 -0.342 1.46 -0.339 0.282 0.445 -0.0614 8.34 1015 4225 -- --
41.24 0.299 9.04 -0.327 1.44 -0.469 0.274 -- -0.076 8.4 1016 4174 -- --
41.19 0.299 9.04 -0.335 1.46 -0.345 -- 0.43 -0.062 8.34 1015 4214 -- --
41.39 0.3 9.03 -0.307 1.46 -0.475 -- -- -0.0659 8.35 1016 4166 -- --
158.96 0.587 9.07 -0.325 -- -0.382 -- 0.497 -0.0345 -- 1015 4345 -- --
44.11 0.311 9.02 -0.245 1.47 -- 0.264 -- -0.00826 8.31 -- -- -- --
44.33 0.312 9.02 -0.237 1.47 -- -- -- -0.00836 8.31 -- -- -- --
158.85 0.587 9.07 -0.32 -- -0.457 -- -- -0.0454 -- 1015 4262 -- --
43.52 0.307 9.03 -- 1.46 -0.308 -- -- -0.0187 8.34 1015 4094 -- --
163.51 0.597 9.06 -0.228 -- -- -- -- 0.00752 -- -- -- -- --
45.81 0.317 9.02 -- 1.47 -- -- -- 0.0181 8.32 -- -- -- --
160.87 0.591 9.07 -- -- -0.433 -- -- -0.0128 -- 1015 4249 -- --
164.88 0.599 9.06 -- -- -- -- -- 0.0328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.13 temperature 20.0 270 > th dose independent rect. 5 21
4 39.38 temperature 25.0 90 < th dose independent rect. 3 4
6 39.41 temperature 20.0 270 > th dose independent rect. 21 4
7 39.43 temperature 20.0 270 > th dose independent rect. 23 1
8 39.48 temperature 25.0 90 < th dose independent rect. 3 8
10 39.52 temperature 20.0 90 > th dose independent rect. 23 4
11 39.52 temperature 25.0 270 < th dose independent rect. 1 4
13 39.56 temperature 20.0 270 > th dose independent rect. 19 7
14 39.56 temperature 15.0 270 > th dose dependent rect. 19 18
15 39.57 temperature 25.0 270 < th dose independent rect. 1 8
17 39.59 temperature 25.0 90 < th dose independent rect. 3 6
26 39.69 radiation 10.0 90 < th dose independent rect. 3 6
29 39.72 temperature 20.0 10 > th dose independent rect. 23 5
31 39.72 temperature 15.0 270 > th dose dependent rect. 23 1
34 39.73 wind 7.0 270 < th dose independent rect. 4 23
41 39.79 humidity 70.0 90 > th dose dependent rect. 21 6
42 39.80 radiation 40.0 270 < th dose dependent rect. 1 10
43 39.81 temperature 15.0 90 > th dose independent rect. 17 14
44 39.82 radiation 10.0 90 < th dose independent rect. 3 4
47 39.84 radiation 20.0 90 < th dose dependent rect. 3 8
48 39.85 humidity 60.0 14400 > th dose independent rect. 4 3
51 39.85 wind 9.0 90 < th dose independent rect. 7 20
53 39.85 temperature 25.0 90 > th dose dependent rect. 17 14
56 39.87 wind 7.0 270 < th dose independent rect. 5 21
59 39.88 atmosphere 1010.0 90 < th dose independent rect. 3 4
60 39.88 wind 1.0 90 > th dose independent rect. 7 10
62 39.89 radiation 10.0 90 < th dose independent rect. 17 14
64 39.89 radiation 20.0 90 < th dose dependent rect. 3 6
71 39.92 temperature 25.0 270 < th dose independent rect. 3 1
73 39.92 radiation 10.0 90 < th dose independent rect. 17 16
74 39.92 wind 7.0 90 < th dose dependent rect. 3 4
79 39.93 temperature 30.0 90 < th dose dependent rect. 3 8
81 39.93 radiation 1.0 270 < th dose dependent rect. 10 16
82 39.94 wind 5.0 90 < th dose independent rect. 3 4
83 39.94 temperature 30.0 90 < th dose dependent rect. 3 4
86 39.95 precipitation 0.1 90 < th dose independent rect. 3 4
88 39.95 precipitation 0.1 90 < th dose dependent rect. 3 4
93 39.96 radiation 30.0 90 < th dose dependent rect. 3 4
97 39.97 humidity 60.0 90 > th dose dependent rect. 19 8
99 39.98 atmosphere 1005.0 90 > th dose independent rect. 3 4
100 39.98 temperature 15.0 30 > th dose dependent rect. 23 4
104 39.99 temperature 15.0 270 > th dose independent rect. 4 23
113 40.01 humidity 70.0 90 > th dose independent rect. 3 4
119 40.02 temperature 10.0 90 > th dose independent rect. 3 4
122 40.02 humidity 50.0 90 > th dose independent rect. 3 4
124 40.02 atmosphere 995.0 90 > th dose independent rect. 3 4
131 40.02 wind 9.0 90 < th dose independent rect. 7 10
136 40.02 radiation 1.0 270 < th dose dependent rect. 5 21
141 40.04 radiation 10.0 270 < th dose independent rect. 1 9
142 40.04 temperature 10.0 270 > th dose dependent rect. 5 9
151 40.08 atmosphere 1005.0 270 > th dose independent rect. 3 1
153 40.09 radiation 20.0 10 < th dose independent rect. 3 5
161 40.11 wind 1.0 270 > th dose independent rect. 2 2
164 40.11 temperature 30.0 90 < th dose dependent rect. 3 10
183 40.15 temperature 25.0 90 > th dose independent rect. 16 6
189 40.15 temperature 10.0 90 > th dose dependent rect. 7 20
190 40.16 atmosphere 1005.0 10 > th dose independent rect. 3 5
191 40.16 humidity 70.0 270 > th dose dependent rect. 23 1
206 40.17 temperature 25.0 90 > th dose dependent rect. 17 8
214 40.18 wind 7.0 270 < th dose independent rect. 5 10
220 40.19 wind 1.0 30 > th dose independent rect. 23 18
225 40.19 radiation 40.0 90 < th dose dependent rect. 17 14
232 40.20 humidity 70.0 90 > th dose dependent rect. 23 4
239 40.21 temperature 15.0 270 > th dose independent rect. 15 14
241 40.21 humidity 90.0 90 > th dose dependent rect. 4 1
242 40.21 humidity 50.0 90 > th dose dependent rect. 3 4
247 40.22 temperature 10.0 90 > th dose independent rect. 7 10
248 40.22 atmosphere 1015.0 90 < th dose independent rect. 7 10
256 40.23 temperature 20.0 10 > th dose independent rect. 21 7
273 40.25 radiation 1.0 270 < th dose independent rect. 10 16
275 40.25 temperature 20.0 270 > th dose independent rect. 19 19
276 40.25 radiation 10.0 30 < th dose independent rect. 3 20
280 40.25 humidity 80.0 10 > th dose dependent rect. 11 17
282 40.26 wind 5.0 270 < th dose independent rect. 3 1
297 40.26 atmosphere 1005.0 270 > th dose independent rect. 1 5
308 40.27 temperature 25.0 10 < th dose independent rect. 12 16
310 40.27 humidity 70.0 10 > th dose dependent rect. 21 7
329 40.29 precipitation 0.1 90 < th dose independent rect. 17 14
336 40.29 precipitation 0.1 90 < th dose dependent rect. 17 14
339 40.29 humidity 80.0 90 > th dose dependent rect. 11 16
341 40.29 temperature 15.0 10 > th dose dependent rect. 23 17
345 40.30 wind 9.0 90 < th dose independent rect. 17 14
346 40.30 atmosphere 995.0 90 > th dose independent rect. 17 14
353 40.30 atmosphere 995.0 90 > th dose dependent rect. 3 4
358 40.31 precipitation 0.1 270 < th dose independent rect. 3 1
363 40.31 precipitation 0.1 270 < th dose dependent rect. 3 1
367 40.31 temperature 30.0 270 < th dose dependent rect. 1 4
374 40.32 precipitation 0.1 90 < th dose independent rect. 7 20
379 40.32 precipitation 0.1 90 < th dose dependent rect. 7 20
398 40.34 precipitation 0.1 90 < th dose independent rect. 7 10
401 40.34 wind 9.0 270 < th dose dependent rect. 3 1
405 40.34 precipitation 0.1 90 < th dose dependent rect. 7 10
412 40.35 temperature 25.0 270 > th dose independent rect. 15 4
437 40.37 temperature 25.0 270 > th dose independent rect. 21 14
464 40.38 temperature 10.0 10 > th dose dependent rect. 7 20
473 40.39 humidity 70.0 10 > th dose dependent rect. 23 5
474 40.39 temperature 10.0 270 > th dose dependent rect. 19 7
485 40.40 temperature 10.0 270 > th dose independent rect. 3 1
488 40.40 humidity 50.0 270 > th dose independent rect. 3 1
491 40.40 atmosphere 995.0 270 > th dose independent rect. 3 1
493 40.40 atmosphere 1010.0 270 < th dose independent rect. 3 1
495 40.40 radiation 1.0 270 < th dose independent rect. 3 1
520 40.40 radiation 1.0 270 < th dose dependent rect. 3 1
541 40.41 atmosphere 1000.0 90 > th dose independent rect. 3 18
556 40.42 humidity 80.0 90 > th dose independent rect. 23 4
562 40.42 radiation 40.0 270 < th dose independent rect. 1 18
563 40.42 atmosphere 1000.0 10 > th dose independent rect. 4 19
565 40.42 radiation 1.0 270 < th dose independent rect. 5 21
581 40.44 temperature 25.0 270 > th dose independent rect. 17 1
591 40.44 atmosphere 995.0 90 > th dose independent rect. 7 20
593 40.44 temperature 30.0 270 < th dose dependent rect. 3 1
594 40.44 atmosphere 995.0 270 > th dose dependent rect. 3 1
609 40.45 humidity 80.0 90 > th dose independent rect. 21 6
611 40.45 temperature 20.0 90 > th dose independent rect. 22 18
612 40.45 temperature 15.0 270 > th dose independent rect. 24 23
643 40.47 radiation 10.0 90 < th dose independent rect. 3 16
647 40.47 wind 9.0 90 < th dose dependent rect. 19 8
659 40.48 atmosphere 995.0 90 > th dose independent rect. 7 10
664 40.48 temperature 20.0 10 > th dose independent rect. 7 21
670 40.48 temperature 30.0 270 < th dose dependent rect. 24 11
674 40.49 atmosphere 1015.0 270 < th dose independent rect. 23 1
693 40.49 temperature 30.0 90 < th dose dependent rect. 3 6
699 40.50 wind 5.0 10 < th dose independent rect. 3 4
708 40.50 precipitation 0.1 270 < th dose independent rect. 5 21
714 40.50 radiation 40.0 30 < th dose dependent rect. 3 20
716 40.50 precipitation 0.1 270 < th dose dependent rect. 5 21
730 40.51 radiation 40.0 270 < th dose independent rect. 24 21
746 40.52 temperature 25.0 270 > th dose independent sin 8 NA
748 40.52 wind 5.0 270 < th dose independent rect. 1 5
753 40.52 atmosphere 1015.0 90 < th dose independent rect. 7 20
764 40.53 humidity 80.0 270 > th dose independent rect. 23 1
771 40.53 precipitation 0.1 90 < th dose independent rect. 3 18
783 40.53 precipitation 0.1 90 < th dose dependent rect. 3 18
789 40.54 radiation 40.0 270 < th dose independent rect. 1 10
793 40.54 humidity 50.0 90 > th dose independent rect. 17 14
794 40.54 radiation 40.0 270 < th dose independent rect. 14 15
795 40.54 precipitation 0.1 90 < th dose independent rect. 3 16
799 40.54 precipitation 0.1 90 < th dose dependent rect. 3 16
817 40.55 temperature 25.0 90 > th dose dependent sin 12 NA
821 40.55 radiation 10.0 14400 < th dose dependent rect. 24 4
824 40.55 atmosphere 1015.0 4320 > th dose dependent rect. 1 7
825 40.55 humidity 50.0 90 > th dose dependent rect. 3 8
840 40.56 wind 9.0 90 < th dose dependent rect. 7 20
841 40.57 wind 5.0 270 < th dose independent rect. 23 1
849 40.57 atmosphere 1000.0 90 > th dose independent rect. 3 16
851 40.57 precipitation 0.1 10 < th dose independent rect. 7 20
855 40.57 temperature 10.0 90 > th dose dependent rect. 3 4
864 40.57 temperature 25.0 10 > th dose dependent rect. 18 9
870 40.57 precipitation 0.1 10 < th dose dependent rect. 7 20
907 40.59 temperature 10.0 270 > th dose independent rect. 23 1
908 40.59 temperature 30.0 270 < th dose independent rect. 23 1
909 40.59 humidity 50.0 270 > th dose independent rect. 23 1
912 40.59 atmosphere 995.0 270 > th dose independent rect. 23 1
913 40.59 radiation 1.0 270 < th dose independent rect. 23 1
918 40.59 precipitation 0.1 270 < th dose independent rect. 23 1
937 40.59 radiation 1.0 270 < th dose dependent rect. 23 1
942 40.59 precipitation 0.1 270 < th dose dependent rect. 23 1
963 40.60 wind 1.0 90 < th dose dependent rect. 4 1
973 40.60 radiation 40.0 90 < th dose dependent rect. 3 16
991 40.61 radiation 40.0 90 < th dose independent rect. 3 20