Os08g0386200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 69.
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Os08g0386200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 69.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.92 | 0.609 | 12.2 | 1.27 | 0.167 | 0.342 | 0.323 | -6.76 | 0.99 | 22.8 | 26.58 | 710 | -- | -- |
| 173.08 | 0.613 | 12.2 | 1.73 | 0.135 | 0.533 | -0.134 | -- | 0.941 | 22.7 | 8.354 | 15857 | -- | -- |
| 168.21 | 0.604 | 12.2 | 1.27 | 0.158 | 0.361 | -- | -6.62 | 0.983 | 23.5 | 26.6 | 722 | -- | -- |
| 171.08 | 0.609 | 12.2 | 1.61 | 0.151 | 0.628 | -- | -- | 0.94 | 23.5 | 10.5 | 29164 | -- | -- |
| 169.73 | 0.607 | 12.2 | 1.19 | -- | 0.45 | -- | -6.85 | 0.989 | -- | 26.7 | 760 | -- | -- |
| 177.65 | 0.625 | 12.1 | 2.11 | 0.147 | -- | -0.0501 | -- | 1.17 | 0.0366 | -- | -- | -- | -- |
| 177.66 | 0.624 | 12.1 | 2.11 | 0.148 | -- | -- | -- | 1.17 | 0.091 | -- | -- | -- | -- |
| 171.77 | 0.61 | 12.2 | 1.46 | -- | 0.698 | -- | -- | 0.875 | -- | 11.91 | 29665 | -- | -- |
| 185.28 | 0.634 | 12.3 | -- | 0.115 | 1.69 | -- | -- | 0.427 | 23.9 | -11.85 | 47520 | -- | -- |
| 179.03 | 0.625 | 12.1 | 2.11 | -- | -- | -- | -- | 1.17 | -- | -- | -- | -- | -- |
| 295.03 | 0.803 | 12.2 | -- | 0.178 | -- | -- | -- | 0.931 | 0.753 | -- | -- | -- | -- |
| 185.56 | 0.634 | 12.3 | -- | -- | 1.7 | -- | -- | 0.425 | -- | 8.968 | 45497 | -- | -- |
| 297.02 | 0.804 | 12.2 | -- | -- | -- | -- | -- | 0.933 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.24 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 2 | 158.43 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 3 | 158.71 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 6 | 159.16 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 10 | 159.41 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 13 | 159.47 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 15 | 159.49 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 19 | 159.52 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 24 | 159.55 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 12 |
| 29 | 159.57 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 20 | NA |
| 46 | 159.61 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 70 | 159.66 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 94 | 159.69 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 104 | 159.72 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 19 | NA |
| 162 | 159.83 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 199 | 159.90 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 209 | 159.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 212 | 159.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 288 | 159.98 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 289 | 159.99 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 473 | 160.21 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 474 | 160.22 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 556 | 160.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 635 | 160.65 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 673 | 160.79 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 732 | 161.04 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 783 | 161.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 788 | 161.29 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 798 | 161.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 805 | 161.35 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 810 | 161.35 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 823 | 161.40 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 834 | 161.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 839 | 161.42 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 851 | 161.46 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 863 | 161.50 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 923 | 161.69 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 935 | 161.72 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 953 | 161.77 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 1 |