Os08g0385000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0385000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.02 | 0.664 | 11.3 | -1.43 | 4.93 | -1.53 | 1.51 | 0.0824 | -0.39 | 7.36 | 78.74 | 914 | -- | -- |
| 200.02 | 0.659 | 11.3 | -1.43 | 4.93 | -1.52 | 1.54 | -- | -0.389 | 7.37 | 78.75 | 916 | -- | -- |
| 205.14 | 0.667 | 11.3 | -1.44 | 4.94 | -1.53 | -- | 0.838 | -0.396 | 7.36 | 79 | 914 | -- | -- |
| 206.45 | 0.669 | 11.3 | -1.4 | 4.93 | -1.52 | -- | -- | -0.385 | 7.35 | 78.98 | 914 | -- | -- |
| 1246.36 | 1.65 | 11.5 | -1.19 | -- | 0.803 | -- | 1.39 | -0.325 | -- | 57 | 1341 | -- | -- |
| 239.12 | 0.725 | 11.3 | -1.33 | 4.41 | -- | 1.41 | -- | -0.341 | 7.02 | -- | -- | -- | -- |
| 244.3 | 0.732 | 11.3 | -1.31 | 4.42 | -- | -- | -- | -0.344 | 7.01 | -- | -- | -- | -- |
| 1246.59 | 1.64 | 11.4 | -1.34 | -- | 1.03 | -- | -- | -0.121 | -- | 78 | 12173 | -- | -- |
| 249.71 | 0.736 | 11.3 | -- | 4.91 | -1.44 | -- | -- | -0.275 | 7.37 | 82.85 | 889 | -- | -- |
| 1270.58 | 1.67 | 11.4 | -1.22 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 289.33 | 0.796 | 11.3 | -- | 4.4 | -- | -- | -- | -0.199 | 7.03 | -- | -- | -- | -- |
| 1284.63 | 1.67 | 11.4 | -- | -- | 1.11 | -- | -- | 0.0396 | -- | 79 | 12174 | -- | -- |
| 1309.73 | 1.69 | 11.4 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.45 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 13 |
| 5 | 191.09 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 6 | 191.17 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 11 |
| 17 | 192.73 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 4 |
| 18 | 192.75 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 1 |
| 25 | 193.52 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 28 | 193.69 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 30 | 193.84 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 56 | 195.20 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 7 |
| 70 | 195.57 | humidity | 80 | 720 | < th | dose independent | sin | 16 | NA |
| 72 | 195.59 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 15 |
| 90 | 196.11 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 20 |
| 97 | 196.25 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 127 | 196.89 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 130 | 196.99 | humidity | 70 | 720 | > th | dose dependent | sin | 16 | NA |
| 135 | 197.09 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 285 | 199.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 290 | 199.75 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 19 |
| 341 | 200.35 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 388 | 200.96 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 500 | 202.29 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 541 | 202.79 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 607 | 203.45 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 655 | 203.91 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 684 | 204.38 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 708 | 204.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 731 | 204.88 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 23 |
| 737 | 204.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 759 | 205.08 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 23 |
| 760 | 205.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 22 |
| 785 | 205.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 802 | 205.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 947 | 206.04 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 962 | 206.07 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 13 |