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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0382700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0191) R2 : 8.4e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00785 (0.0401) R2dN8 : 0.000108 R2N8 : 8.4e-05
σ : 0.359
deviance : 59.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.24 0.352 2.91 0.39 0.124 -1.59 0.114 14.6 -0.00351 14.3 30.93 35 -- --
57.78 0.357 2.96 0.0017 0.119 0.174 0.123 -- 5.38e-05 14.1 30.93 35 -- --
56.28 0.349 2.91 0.391 0.123 -1.61 -- 14.9 -0.00248 14 31 34 -- --
57.82 0.356 2.96 0.00525 0.119 0.214 -- -- 0.000247 13.9 31.7 15 -- --
57.13 0.352 2.91 0.384 -- -1.57 -- 15.1 -0.00238 -- 31.06 34 -- --
57.98 0.357 2.96 0.00855 0.133 -- 0.157 -- -0.00472 14.3 -- -- -- --
58.07 0.357 2.96 0.0128 0.133 -- -- -- -0.00392 14 -- -- -- --
58.63 0.358 2.96 -0.00306 -- 0.269 -- -- 0.000297 -- 31.06 34 -- --
57.82 0.354 2.96 -- 0.119 0.217 -- -- -0.000193 13.8 31.77 15 -- --
59.12 0.359 2.96 0.00732 -- -- -- -- -0.00704 -- -- -- -- --
58.07 0.356 2.96 -- 0.132 -- -- -- -0.00535 14 -- -- -- --
58.63 0.358 2.96 -- -- 0.268 -- -- 0.000622 -- 31.06 34 -- --
59.13 0.359 2.96 -- -- -- -- -- -0.00785 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.65 atmosphere 1000.0 90 < th dose dependent rect. 10 1
14 47.93 wind 1.0 10 < th dose independent rect. 12 1
16 47.93 wind 1.0 10 < th dose dependent rect. 12 1
18 48.49 atmosphere 1000.0 90 < th dose independent rect. 10 1
69 51.56 temperature 30.0 90 > th dose dependent rect. 10 1
83 52.27 humidity 70.0 270 < th dose independent rect. 19 14
110 52.46 humidity 70.0 10 < th dose dependent rect. 10 1
115 52.55 temperature 30.0 270 > th dose dependent rect. 8 1
131 52.59 temperature 30.0 270 > th dose independent rect. 8 1
149 52.80 humidity 70.0 270 < th dose independent rect. 18 16
172 52.98 atmosphere 1000.0 10 < th dose dependent rect. 8 5
185 53.20 radiation 40.0 30 > th dose dependent rect. 10 1
187 53.23 temperature 30.0 270 > th dose independent rect. 18 16
192 53.26 humidity 70.0 10 < th dose independent rect. 10 1
194 53.27 radiation 20.0 30 > th dose dependent rect. 10 1
277 53.39 humidity 70.0 30 < th dose independent rect. 19 1
294 53.44 radiation 30.0 30 > th dose independent rect. 10 1
304 53.53 atmosphere 1005.0 30 > th dose independent rect. 10 1
308 53.55 atmosphere 1010.0 30 < th dose independent rect. 10 1
309 53.56 temperature 30.0 90 > th dose dependent sin 9 NA
311 53.57 atmosphere 995.0 30 > th dose dependent rect. 10 1
314 53.60 temperature 20.0 30 > th dose independent rect. 10 1
319 53.61 temperature 30.0 30 < th dose independent rect. 10 1
321 53.61 humidity 70.0 30 < th dose dependent rect. 19 1
333 53.62 wind 1.0 30 > th dose independent rect. 10 1
335 53.62 temperature 10.0 30 > th dose independent rect. 10 1
337 53.62 humidity 50.0 30 > th dose independent rect. 10 1
338 53.62 humidity 90.0 30 < th dose independent rect. 10 1
343 53.62 precipitation 0.1 30 < th dose independent rect. 10 1
344 53.62 temperature 10.0 30 > th dose independent rect. 11 23
345 53.62 precipitation 0.1 30 < th dose dependent rect. 10 1
347 53.63 wind 7.0 30 < th dose dependent rect. 10 1
349 53.65 humidity 70.0 270 > th dose independent sin 10 NA
352 53.66 temperature 10.0 30 > th dose dependent rect. 10 1
379 53.76 humidity 70.0 270 < th dose independent sin 10 NA
396 53.78 atmosphere 1000.0 10 < th dose independent rect. 8 5
403 53.80 temperature 10.0 1440 > th dose independent rect. 11 1
407 53.80 atmosphere 995.0 1440 > th dose independent rect. 11 1
410 53.80 precipitation 0.1 1440 < th dose independent rect. 11 1
412 53.80 temperature 10.0 1440 > th dose independent rect. 12 23
416 53.80 precipitation 0.1 1440 < th dose dependent rect. 11 1
433 53.81 humidity 70.0 270 < th dose dependent rect. 18 16
471 53.88 atmosphere 1015.0 30 < th dose dependent rect. 10 1
482 53.94 wind 1.0 30 > th dose dependent rect. 10 1
489 53.96 radiation 40.0 30 < th dose independent rect. 10 1
515 54.04 humidity 70.0 270 < th dose independent rect. 8 1
566 54.18 humidity 50.0 30 > th dose dependent rect. 10 1
569 54.21 radiation 40.0 30 < th dose dependent rect. 10 1
612 54.37 wind 1.0 10 < th dose independent sin 20 NA
615 54.39 temperature 30.0 90 > th dose independent rect. 18 1
635 54.42 temperature 30.0 90 > th dose dependent rect. 18 1
703 54.61 humidity 70.0 270 < th dose dependent rect. 19 13
714 54.68 humidity 80.0 270 < th dose dependent rect. 7 2
729 54.71 temperature 30.0 270 > th dose independent sin 9 NA
747 54.75 wind 1.0 10 > th dose independent sin 20 NA
750 54.77 humidity 80.0 270 < th dose dependent rect. 6 4
876 55.00 humidity 80.0 270 < th dose dependent sin 10 NA
894 55.02 humidity 70.0 30 < th dose dependent rect. 16 19
923 55.07 humidity 70.0 720 > th dose independent rect. 2 7
950 55.12 atmosphere 1000.0 720 < th dose independent rect. 24 12
953 55.12 wind 9.0 30 < th dose independent rect. 11 23