Os08g0382400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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Os08g0382400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.55 | 0.496 | 12.2 | -2.12 | 0.689 | -0.0352 | 1.69 | -5.98 | -0.981 | 21.1 | 29.9 | 4384 | -- | -- |
| 127.73 | 0.526 | 12.3 | -2.75 | 0.819 | -0.264 | 1.25 | -- | -0.98 | 21.1 | 29.6 | 5820 | -- | -- |
| 120.87 | 0.512 | 12.2 | -2.15 | 0.678 | -0.111 | -- | -6.28 | -0.943 | 20.9 | 29.7 | 3351 | -- | -- |
| 127.09 | 0.525 | 12.3 | -3.14 | 0.702 | -0.544 | -- | -- | -1.03 | 20.5 | 32.55 | 5802 | -- | -- |
| 146.8 | 0.564 | 12.1 | -2.21 | -- | -0.175 | -- | -6.16 | -0.961 | -- | 29.8 | 3649 | -- | -- |
| 134.67 | 0.544 | 12.3 | -3.01 | 0.701 | -- | 1.71 | -- | -1.15 | 21.4 | -- | -- | -- | -- |
| 145.34 | 0.565 | 12.3 | -3.07 | 0.697 | -- | -- | -- | -1.15 | 21.2 | -- | -- | -- | -- |
| 150.43 | 0.571 | 12.3 | -3.27 | -- | -0.758 | -- | -- | -1.11 | -- | 32.6 | 6531 | -- | -- |
| 393.04 | 0.923 | 12.2 | -- | 0.682 | -0.223 | -- | -- | -0.766 | 20.7 | 32 | 3860 | -- | -- |
| 173.59 | 0.616 | 12.3 | -3.07 | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
| 394.18 | 0.929 | 12.2 | -- | 0.701 | -- | -- | -- | -0.806 | 20.9 | -- | -- | -- | -- |
| 419.88 | 0.954 | 12.2 | -- | -- | -0.267 | -- | -- | -0.761 | -- | 31.21 | 2149 | -- | -- |
| 422.21 | 0.959 | 12.2 | -- | -- | -- | -- | -- | -0.811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 3 | 101.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 4 | 101.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 5 | 101.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 14 | 103.52 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 36 | 104.77 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 54 | 105.22 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 57 | 105.31 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 60 | 105.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 63 | 105.42 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 88 | 105.78 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 113 | 106.14 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 130 | 106.26 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 137 | 106.34 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 139 | 106.35 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 140 | 106.36 | humidity | 80.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 245 | 107.27 | humidity | 80.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 262 | 107.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 11 |
| 266 | 107.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 13 |
| 296 | 107.47 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 301 | 107.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 462 | 108.46 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 485 | 108.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 494 | 108.64 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 663 | 109.34 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 715 | 109.43 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 728 | 109.47 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 746 | 109.54 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 761 | 109.60 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 794 | 109.72 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 795 | 109.72 | humidity | 50.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 950 | 110.04 | humidity | 80.0 | 14400 | < th | dose independent | no | NA | NA |