Os08g0381600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-amylase/trypsin inhibitor (Antifungal protein).
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Os08g0381600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-amylase/trypsin inhibitor (Antifungal protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.47 | 0.662 | 7.33 | 1.89 | 1.13 | -1.93 | -0.0482 | -0.17 | -0.3 | 8.67 | 21.58 | 1416 | -- | -- |
| 195.55 | 0.651 | 7.32 | 1.83 | 1.13 | -1.79 | 0.015 | -- | -0.278 | 8.56 | 22 | 1484 | -- | -- |
| 196.06 | 0.652 | 7.29 | 1.92 | 1.16 | -1.84 | -- | 0.264 | -0.241 | 8.48 | 22 | 1523 | -- | -- |
| 195.24 | 0.651 | 7.31 | 1.79 | 1.14 | -1.76 | -- | -- | -0.266 | 8.7 | 22.12 | 1489 | -- | -- |
| 248.19 | 0.734 | 7.33 | 1.85 | -- | -1.75 | -- | 0.343 | -0.218 | -- | 22.2 | 836 | -- | -- |
| 307.93 | 0.823 | 7.45 | 1.15 | 1.14 | -- | -0.128 | -- | -0.848 | 8.92 | -- | -- | -- | -- |
| 307.99 | 0.822 | 7.45 | 1.14 | 1.14 | -- | -- | -- | -0.848 | 8.91 | -- | -- | -- | -- |
| 248.63 | 0.734 | 7.35 | 1.72 | -- | -1.73 | -- | -- | -0.271 | -- | 22.18 | 836 | -- | -- |
| 269.41 | 0.764 | 7.38 | -- | 1.13 | -1.31 | -- | -- | -0.577 | 8.49 | 22.32 | 1362 | -- | -- |
| 381.85 | 0.913 | 7.48 | 1.14 | -- | -- | -- | -- | -0.84 | -- | -- | -- | -- | -- |
| 342.32 | 0.865 | 7.47 | -- | 1.14 | -- | -- | -- | -0.975 | 8.84 | -- | -- | -- | -- |
| 319.41 | 0.832 | 7.41 | -- | -- | -1.38 | -- | -- | -0.543 | -- | 22.35 | 792 | -- | -- |
| 416.19 | 0.952 | 7.5 | -- | -- | -- | -- | -- | -0.967 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 198.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 3 | 199.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 8 | 199.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 12 | 199.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 14 | 199.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 20 | 199.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 22 | 199.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 50 | 200.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 121 | 201.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 259 | 204.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 348 | 206.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 481 | 208.26 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 493 | 208.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 494 | 208.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 523 | 208.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 603 | 210.07 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 626 | 210.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 710 | 211.18 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 775 | 211.90 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |