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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0377300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0355) R2 : 0.00103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0511 (0.0747) R2dN8 : 0.00133 R2N8 : 0.00103
σ : 0.668
deviance : 204.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.11 0.648 2.96 0.216 0.0265 11.2 0.192 23.8 0.0644 4.05 1016 1577 -- --
204.06 0.67 2.88 0.0787 0.00295 -0.23 0.395 -- 0.0593 7.75 1016 1577 -- --
189.62 0.641 2.97 0.209 0.0469 11.9 -- 25 0.0665 1.62 1016 1556 -- --
204.34 0.67 2.87 0.0816 0.0304 -0.146 -- -- 0.0838 4.09 1005 1623 -- --
188.82 0.64 3 0.233 -- 14.8 -- 31.4 0.0588 -- 1016 1567 -- --
204.21 0.67 2.88 0.0762 0.00611 -- 0.401 -- 0.0611 7.81 -- -- -- --
204.64 0.67 2.88 0.0857 0.0254 -- -- -- 0.0601 3.05 -- -- -- --
203.68 0.665 2.88 0.125 -- 0.279 -- -- 0.0249 -- 986.2 2360 -- --
204.33 0.666 2.88 -- 0.0304 0.129 -- -- 0.0605 2.99 1004 11620 -- --
204.68 0.669 2.88 0.0868 -- -- -- -- 0.0608 -- -- -- -- --
204.84 0.669 2.88 -- 0.0271 -- -- -- 0.0505 3.06 -- -- -- --
204.08 0.665 2.89 -- -- 0.245 -- -- 0.016 -- 990.8 2340 -- --
204.88 0.668 2.88 -- -- -- -- -- 0.0511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.34 temperature 20 270 < th dose dependent rect. 6 2
3 184.70 temperature 20 270 < th dose dependent rect. 6 13
6 184.87 temperature 20 270 < th dose dependent rect. 6 5
15 187.69 atmosphere 1010 270 > th dose dependent rect. 6 1
21 187.83 atmosphere 1015 1440 < th dose independent rect. 4 7
27 187.87 atmosphere 1015 1440 > th dose independent rect. 3 9
28 187.87 atmosphere 1010 90 > th dose dependent rect. 8 1
36 187.87 atmosphere 1015 1440 > th dose dependent rect. 3 8
39 187.90 atmosphere 1015 1440 > th dose dependent rect. 2 10
42 187.97 atmosphere 1015 1440 < th dose independent rect. 11 1
47 188.04 atmosphere 1015 1440 < th dose independent rect. 8 4
48 188.05 atmosphere 1015 1440 > th dose independent rect. 10 1
64 188.05 atmosphere 1015 1440 > th dose dependent rect. 10 1
97 188.15 atmosphere 1015 1440 < th dose independent rect. 24 12
119 188.34 atmosphere 1010 270 > th dose independent rect. 5 1
164 188.64 radiation 1 90 < th dose independent rect. 14 1
165 188.64 radiation 1 90 < th dose dependent rect. 14 1
182 189.54 atmosphere 1015 1440 > th dose dependent sin 2 NA
275 189.92 wind 1 10 < th dose independent rect. 22 1
277 189.92 wind 1 10 < th dose dependent rect. 22 1
291 190.06 wind 7 1440 < th dose independent rect. 3 1
306 190.68 temperature 20 270 < th dose independent rect. 6 3
307 190.81 temperature 20 270 < th dose independent rect. 6 13
308 190.82 temperature 20 270 < th dose independent rect. 6 8
311 190.83 temperature 20 270 < th dose independent rect. 6 6
342 191.29 temperature 25 10 < th dose independent rect. 10 1
345 191.40 wind 1 10 < th dose dependent rect. 15 8
354 191.52 atmosphere 1015 1440 > th dose independent sin 3 NA
477 192.02 temperature 25 90 < th dose dependent rect. 8 1
478 192.10 radiation 20 10 < th dose independent rect. 10 1
485 192.27 atmosphere 1015 1440 < th dose independent sin 3 NA
506 192.91 atmosphere 1015 1440 < th dose independent rect. 24 16
509 192.94 atmosphere 1015 1440 < th dose independent rect. 4 15
510 192.94 atmosphere 1015 1440 < th dose independent rect. 24 19
531 193.00 atmosphere 1015 1440 < th dose independent rect. 9 10
631 194.16 wind 3 270 > th dose dependent rect. 6 1
661 194.62 radiation 1 90 < th dose independent rect. 6 10
712 195.00 radiation 1 4320 < th dose dependent rect. 3 1
715 195.10 wind 3 270 > th dose independent rect. 6 1
723 195.16 temperature 10 1440 > th dose independent rect. 3 1
726 195.16 temperature 30 1440 < th dose independent rect. 3 1
730 195.16 humidity 50 1440 > th dose independent rect. 3 1
739 195.16 atmosphere 995 1440 > th dose independent rect. 3 1
740 195.16 radiation 1 1440 < th dose independent rect. 3 1
760 195.16 temperature 10 1440 > th dose independent rect. 4 23
775 195.24 wind 3 90 > th dose independent rect. 8 1
777 195.26 radiation 1 270 < th dose dependent rect. 9 7
799 195.57 radiation 1 270 < th dose independent rect. 9 6
802 195.58 wind 3 10 > th dose independent rect. 9 2
839 195.87 wind 3 30 > th dose dependent rect. 20 1
848 195.98 radiation 40 30 < th dose dependent rect. 9 1
856 196.04 wind 3 10 > th dose independent rect. 20 1
870 196.08 wind 1 10 < th dose independent rect. 15 8
907 196.19 wind 9 1440 < th dose independent rect. 21 1
911 196.21 wind 9 1440 < th dose independent rect. 24 7
940 196.35 wind 9 1440 < th dose independent rect. 22 9
950 196.36 atmosphere 1015 1440 > th dose dependent no NA NA