Os08g0376700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0376700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.66 | 0.224 | 2.92 | -0.229 | 0.0626 | 7.9 | 0.0757 | -28.1 | 0.0569 | 9.48 | 1.5 | 281 | -- | -- |
| 28.97 | 0.253 | 2.87 | -0.00199 | 0.0423 | -0.0163 | 0.0065 | -- | 0.0504 | 11.9 | 0.7751 | 51 | -- | -- |
| 22.68 | 0.222 | 2.92 | -0.234 | 0.0626 | 7.9 | -- | -28.2 | 0.0564 | 9.78 | 1.495 | 282 | -- | -- |
| 28.96 | 0.251 | 2.87 | -0.000322 | 0.0411 | -0.0933 | -- | -- | 0.0511 | 11.9 | 0.6335 | 55 | -- | -- |
| 22.89 | 0.223 | 2.92 | -0.237 | -- | 8.45 | -- | -31 | 0.0575 | -- | 1.473 | 272 | -- | -- |
| 28.97 | 0.252 | 2.87 | -0.00217 | 0.0424 | -- | 0.00691 | -- | 0.0504 | 11.9 | -- | -- | -- | -- |
| 28.97 | 0.252 | 2.87 | -0.0019 | 0.0423 | -- | -- | -- | 0.0504 | 11.9 | -- | -- | -- | -- |
| 25.83 | 0.237 | 2.87 | -0.0322 | -- | 0.982 | -- | -- | 0.0661 | -- | 1.014 | 180 | -- | -- |
| 28.95 | 0.251 | 2.87 | -- | 0.0418 | -0.0999 | -- | -- | 0.0499 | 12 | -0.7385 | 55 | -- | -- |
| 29.08 | 0.252 | 2.87 | -0.00317 | -- | -- | -- | -- | 0.0499 | -- | -- | -- | -- | -- |
| 28.97 | 0.252 | 2.87 | -- | 0.0424 | -- | -- | -- | 0.0506 | 11.9 | -- | -- | -- | -- |
| 24.19 | 0.229 | 2.87 | -- | -- | 1.44 | -- | -- | 0.0619 | -- | 1.5 | 180 | -- | -- |
| 29.08 | 0.252 | 2.87 | -- | -- | -- | -- | -- | 0.0502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.65 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 17 | 2 |
| 3 | 22.66 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 1 |
| 5 | 22.69 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 10 | 22.77 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 3 |
| 11 | 22.77 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 12 | 22.79 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 18 | 1 |
| 17 | 22.87 | temperature | 20.0 | 10 | < th | dose independent | rect. | 13 | 7 |
| 22 | 22.88 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 69 | 23.93 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 87 | 24.36 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 108 | 24.91 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 20 | NA |
| 146 | 25.31 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 169 | 25.42 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 190 | 25.52 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 10 |
| 198 | 25.54 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 259 | 25.84 | temperature | 20.0 | 10 | > th | dose independent | sin | 21 | NA |
| 260 | 25.84 | temperature | 20.0 | 10 | < th | dose independent | sin | 21 | NA |
| 498 | 26.73 | precipitation | 0.1 | 270 | > th | dose dependent | no | NA | NA |
| 509 | 26.75 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 516 | 26.76 | precipitation | 0.1 | 270 | > th | dose independent | sin | 19 | NA |
| 524 | 26.78 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 527 | 26.78 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 8 | 6 |
| 534 | 26.80 | precipitation | 0.1 | 270 | < th | dose independent | sin | 19 | NA |
| 537 | 26.80 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 19 | NA |
| 542 | 26.81 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 564 | 26.86 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 8 | 5 |
| 588 | 26.90 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 615 | 26.97 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 623 | 26.98 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 626 | 26.98 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 642 | 27.00 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 660 | 27.01 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 682 | 27.03 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 751 | 27.08 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 827 | 27.13 | wind | 9.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 859 | 27.13 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 888 | 27.13 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 891 | 27.14 | atmosphere | 1000.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 914 | 27.16 | atmosphere | 1000.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 947 | 27.17 | temperature | 20.0 | 10 | < th | dose independent | rect. | 2 | 19 |
| 961 | 27.18 | wind | 3.0 | 10 | < th | dose independent | rect. | 19 | 2 |
| 975 | 27.19 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 980 | 27.19 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 994 | 27.19 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 23 | 11 |