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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0376300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Leucine-rich receptor-like protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.6 (0.0444) R2 : 0.852
β1 : 2.93 (0.162) R2dD : 0.11 R2D : 0.0885
β2 : 5.33 (0.112) R2dC : 0.745 R2C : 0.729
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.824 (0.0947) R2dN8 : 0.0331 R2N8 : -0.00268
σ : 0.834
deviance : 317.11
__
_____
C
peak time of C : 20.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.08 0.795 6.46 3.89 5.32 -0.178 -1.56 -4.9 1.07 20.4 0.3281 4254 -- --
300.55 0.807 6.56 3.51 5.17 1.24 -1.97 -- 1.01 20.3 0.02194 4426 -- --
289.29 0.792 6.47 3.89 5.31 -0.175 -- -4.7 1.08 20.4 0.33 4435 -- --
300.71 0.808 6.56 3.27 5.18 1.03 -- -- 0.994 20.3 0.006702 4443 -- --
1193.91 1.62 6.45 3.04 -- 2.53 -- -1.43 0.821 -- 0.33 4435 -- --
312.79 0.829 6.6 2.89 5.32 -- -1.17 -- 0.825 20.4 -- -- -- --
317.11 0.834 6.6 2.93 5.33 -- -- -- 0.824 20.4 -- -- -- --
1202.59 1.62 6.43 3.04 -- 2.52 -- -- 0.931 -- 0.006702 4443 -- --
527.91 1.07 6.67 -- 5.32 0.782 -- -- 0.502 20.5 70.04 47520 -- --
1899.48 2.04 6.46 2.9 -- -- -- -- 0.771 -- -- -- -- --
542.8 1.09 6.68 -- 5.31 -- -- -- 0.499 20.5 -- -- -- --
1395.42 1.75 6.51 -- -- 2.61 -- -- 0.553 -- 3.766 3069 -- --
2121.15 2.15 6.54 -- -- -- -- -- 0.449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.31 radiation 10.0 720 < th dose independent rect. 1 6
2 271.34 temperature 15.0 720 > th dose independent rect. 19 2
4 272.61 radiation 10.0 720 < th dose independent rect. 18 14
5 273.13 radiation 10.0 720 < th dose dependent rect. 19 14
6 273.18 radiation 1.0 90 > th dose independent rect. 5 2
20 274.02 radiation 1.0 30 > th dose dependent rect. 5 2
31 274.29 temperature 15.0 90 > th dose independent rect. 19 12
38 274.93 radiation 10.0 720 < th dose dependent rect. 1 8
69 276.68 radiation 10.0 720 < th dose independent sin 11 NA
86 277.42 temperature 20.0 30 > th dose dependent rect. 5 2
88 277.45 wind 5.0 720 < th dose independent rect. 7 2
108 278.20 wind 1.0 43200 < th dose independent rect. 2 6
113 278.52 temperature 15.0 270 > th dose independent rect. 17 13
115 278.68 wind 1.0 43200 < th dose dependent rect. 6 1
121 278.82 temperature 25.0 10 > th dose independent rect. 5 2
125 279.03 wind 1.0 43200 > th dose independent rect. 2 6
131 279.39 wind 1.0 720 > th dose independent rect. 19 2
134 279.61 wind 9.0 720 < th dose independent rect. 21 22
136 279.67 radiation 10.0 720 < th dose dependent sin 10 NA
139 279.80 wind 1.0 43200 < th dose independent rect. 5 3
141 279.81 wind 1.0 43200 > th dose independent rect. 5 3
146 280.11 wind 1.0 43200 < th dose dependent rect. 5 3
161 280.68 wind 3.0 14400 > th dose dependent rect. 14 2
170 280.98 radiation 40.0 43200 < th dose independent rect. 16 13
171 281.00 temperature 15.0 720 > th dose independent rect. 11 10
175 281.07 radiation 1.0 4320 > th dose independent rect. 17 2
185 281.09 humidity 60.0 720 > th dose independent rect. 19 2
186 281.10 wind 3.0 14400 > th dose independent rect. 13 1
189 281.13 wind 7.0 720 < th dose independent rect. 23 10
191 281.15 temperature 30.0 720 < th dose independent rect. 19 2
193 281.15 atmosphere 995.0 720 > th dose independent rect. 19 2
194 281.15 radiation 1.0 720 < th dose independent rect. 19 2
199 281.15 temperature 10.0 720 > th dose independent rect. 21 22
200 281.15 radiation 1.0 720 < th dose dependent rect. 19 2
205 281.19 precipitation 0.1 720 < th dose independent rect. 7 2
206 281.19 precipitation 0.1 720 < th dose dependent rect. 7 2
211 281.31 wind 9.0 720 < th dose independent rect. 19 2
212 281.31 humidity 60.0 720 > th dose independent rect. 7 2
213 281.36 wind 5.0 14400 < th dose independent rect. 14 1
217 281.42 wind 1.0 43200 < th dose dependent rect. 2 6
219 281.44 wind 5.0 14400 < th dose independent rect. 14 3
220 281.47 wind 9.0 14400 < th dose dependent rect. 14 2
225 281.56 wind 1.0 43200 < th dose independent rect. 21 1
227 281.61 temperature 10.0 720 > th dose independent rect. 7 2
230 281.61 atmosphere 995.0 720 > th dose independent rect. 7 2
231 281.61 atmosphere 1015.0 720 < th dose independent rect. 7 2
232 281.61 temperature 10.0 720 > th dose independent rect. 9 22
260 282.00 wind 1.0 90 > th dose independent rect. 7 12
273 282.15 wind 5.0 14400 > th dose independent rect. 14 3
276 282.16 radiation 1.0 720 > th dose independent rect. 9 6
279 282.19 radiation 1.0 4320 < th dose dependent rect. 17 12
280 282.20 radiation 1.0 4320 < th dose dependent rect. 17 9
283 282.22 radiation 1.0 4320 < th dose dependent rect. 17 2
288 282.24 radiation 1.0 4320 < th dose dependent rect. 17 6
303 282.41 radiation 40.0 43200 < th dose independent rect. 16 2
322 282.53 wind 9.0 90 < th dose independent rect. 7 22
323 282.54 wind 1.0 43200 > th dose independent rect. 21 1
327 282.59 wind 1.0 720 > th dose independent rect. 13 6
330 282.60 radiation 1.0 4320 < th dose independent rect. 17 11
333 282.61 radiation 1.0 4320 < th dose independent rect. 17 2
334 282.61 radiation 1.0 4320 < th dose independent rect. 17 9
350 282.65 radiation 1.0 4320 < th dose independent rect. 17 6
356 282.69 humidity 70.0 90 > th dose independent rect. 18 13
370 282.82 precipitation 0.1 43200 > th dose independent rect. 11 6
375 282.89 precipitation 0.1 43200 > th dose independent rect. 18 4
378 282.92 precipitation 0.1 43200 > th dose dependent rect. 11 6
379 282.93 precipitation 0.1 43200 < th dose independent rect. 11 6
380 282.93 precipitation 0.1 43200 < th dose dependent rect. 11 6
382 282.95 wind 5.0 90 < th dose independent rect. 5 2
384 282.98 precipitation 0.1 43200 < th dose independent rect. 18 4
385 282.98 precipitation 0.1 43200 < th dose dependent rect. 18 4
386 283.00 humidity 70.0 90 > th dose independent rect. 5 2
387 283.00 wind 7.0 720 < th dose independent rect. 21 14
389 283.02 radiation 10.0 14400 > th dose independent rect. 5 3
401 283.03 precipitation 0.1 43200 < th dose independent rect. 9 10
402 283.03 precipitation 0.1 43200 > th dose dependent rect. 11 4
403 283.03 precipitation 0.1 43200 < th dose dependent rect. 9 10
405 283.05 precipitation 0.1 90 < th dose independent rect. 5 2
407 283.05 precipitation 0.1 90 < th dose dependent rect. 5 2
415 283.07 precipitation 0.1 43200 > th dose independent rect. 11 4
416 283.09 precipitation 0.1 43200 > th dose independent rect. 14 3
418 283.11 precipitation 0.1 43200 > th dose independent rect. 10 9
420 283.12 precipitation 0.1 43200 < th dose independent rect. 14 3
421 283.12 precipitation 0.1 43200 < th dose dependent rect. 14 3
439 283.18 temperature 20.0 90 > th dose independent rect. 5 2
441 283.18 precipitation 0.1 43200 > th dose dependent rect. 14 3
447 283.21 radiation 20.0 90 < th dose independent rect. 5 2
448 283.21 temperature 30.0 90 < th dose independent rect. 18 13
449 283.22 wind 3.0 14400 > th dose independent rect. 12 3
452 283.23 precipitation 0.1 43200 > th dose independent rect. 10 12
453 283.23 precipitation 0.1 43200 < th dose independent rect. 8 14
454 283.23 precipitation 0.1 43200 < th dose dependent rect. 8 14
457 283.24 wind 1.0 43200 < th dose dependent rect. 16 6
459 283.25 wind 9.0 90 < th dose independent rect. 7 12
460 283.25 precipitation 0.1 43200 < th dose independent rect. 10 12
462 283.25 precipitation 0.1 43200 < th dose dependent rect. 10 12
470 283.30 precipitation 0.1 43200 < th dose independent rect. 11 4
472 283.30 precipitation 0.1 43200 < th dose dependent rect. 11 4
475 283.31 temperature 10.0 90 > th dose independent rect. 5 2
477 283.31 temperature 30.0 90 < th dose independent rect. 5 2
478 283.31 humidity 50.0 90 > th dose independent rect. 5 2
480 283.31 atmosphere 995.0 90 > th dose independent rect. 5 2
481 283.31 atmosphere 1015.0 90 < th dose independent rect. 5 2
484 283.31 temperature 10.0 90 > th dose independent rect. 7 22
486 283.33 precipitation 0.1 43200 > th dose independent rect. 21 1
487 283.33 precipitation 0.1 43200 > th dose independent rect. 18 8
489 283.33 precipitation 0.1 90 < th dose independent rect. 7 22
492 283.33 precipitation 0.1 90 < th dose dependent rect. 7 22
495 283.35 radiation 10.0 90 < th dose independent rect. 5 7
500 283.36 wind 9.0 90 < th dose dependent rect. 5 2
503 283.37 precipitation 0.1 43200 < th dose independent rect. 18 8
506 283.37 precipitation 0.1 43200 < th dose dependent rect. 18 8
507 283.37 wind 1.0 43200 < th dose dependent rect. 12 13
514 283.39 precipitation 0.1 43200 < th dose independent rect. 10 1
515 283.39 precipitation 0.1 43200 < th dose dependent rect. 10 1
516 283.40 precipitation 0.1 43200 > th dose independent rect. 11 15
517 283.40 precipitation 0.1 43200 > th dose dependent rect. 21 1
523 283.44 precipitation 0.1 43200 < th dose independent rect. 11 15
525 283.44 precipitation 0.1 43200 < th dose dependent rect. 11 15
527 283.46 precipitation 0.1 43200 < th dose independent rect. 21 1
529 283.46 precipitation 0.1 43200 < th dose dependent rect. 21 1
533 283.48 wind 1.0 43200 < th dose dependent rect. 19 1
546 283.54 wind 1.0 43200 < th dose independent rect. 14 11
551 283.56 radiation 10.0 14400 > th dose dependent rect. 6 1
554 283.57 radiation 1.0 720 > th dose dependent rect. 6 3
567 283.60 radiation 1.0 4320 < th dose dependent sin 15 NA
575 283.61 wind 1.0 43200 < th dose dependent rect. 21 1
580 283.61 precipitation 0.1 43200 > th dose dependent rect. 21 5
594 283.63 temperature 15.0 720 > th dose independent rect. 9 13
600 283.64 precipitation 0.1 43200 > th dose independent rect. 14 12
604 283.65 precipitation 0.1 43200 < th dose independent rect. 14 12
605 283.65 precipitation 0.1 43200 < th dose dependent rect. 14 12
617 283.69 radiation 1.0 4320 > th dose independent sin 16 NA
630 283.71 radiation 1.0 720 > th dose dependent rect. 4 5
653 283.74 precipitation 0.1 43200 > th dose independent rect. 14 9
656 283.75 precipitation 0.1 43200 > th dose independent rect. 14 1
660 283.75 precipitation 0.1 43200 > th dose dependent rect. 14 1
668 283.77 atmosphere 995.0 43200 < th dose dependent rect. 14 12
671 283.78 radiation 30.0 90 < th dose independent rect. 19 12
681 283.79 precipitation 0.1 43200 < th dose independent rect. 14 9
683 283.79 precipitation 0.1 43200 < th dose dependent rect. 14 9
688 283.81 radiation 1.0 720 > th dose independent rect. 7 2
689 283.81 radiation 10.0 10 < th dose independent rect. 5 8
694 283.82 temperature 10.0 90 > th dose independent rect. 7 12
697 283.82 humidity 50.0 90 > th dose independent rect. 19 12
699 283.82 atmosphere 995.0 90 > th dose independent rect. 19 12
700 283.82 atmosphere 1015.0 90 < th dose independent rect. 7 12
703 283.83 precipitation 0.1 43200 > th dose independent sin 19 NA
709 283.84 precipitation 0.1 43200 < th dose independent sin 19 NA
713 283.84 precipitation 0.1 43200 < th dose dependent sin 19 NA
732 283.88 radiation 1.0 4320 > th dose independent rect. 12 7
811 283.95 precipitation 0.1 43200 > th dose independent rect. 21 5
819 283.96 atmosphere 995.0 90 > th dose dependent rect. 5 2
826 283.97 precipitation 0.1 43200 < th dose independent rect. 21 5
829 283.97 precipitation 0.1 43200 < th dose dependent rect. 21 5
861 284.04 precipitation 0.1 43200 < th dose independent rect. 14 1
865 284.04 precipitation 0.1 43200 < th dose dependent rect. 14 1
867 284.05 wind 9.0 90 < th dose independent rect. 19 12
872 284.06 wind 1.0 43200 > th dose independent rect. 14 11
874 284.06 wind 1.0 43200 < th dose dependent rect. 13 10
879 284.08 radiation 10.0 1440 < th dose independent rect. 7 2
882 284.09 radiation 1.0 4320 < th dose dependent rect. 12 18
911 284.14 radiation 1.0 30 < th dose independent rect. 23 18
917 284.15 radiation 10.0 14400 < th dose independent rect. 10 1
918 284.15 wind 9.0 43200 > th dose dependent rect. 18 1
919 284.16 precipitation 0.1 43200 < th dose independent rect. 24 1
921 284.16 precipitation 0.1 43200 < th dose dependent rect. 24 1
922 284.16 precipitation 0.1 43200 > th dose dependent rect. 18 8
925 284.17 precipitation 0.1 90 < th dose independent rect. 7 12
926 284.17 precipitation 0.1 90 < th dose dependent rect. 7 12
932 284.21 radiation 10.0 10 < th dose independent rect. 5 5
939 284.24 atmosphere 1015.0 720 < th dose independent rect. 19 2
942 284.24 radiation 10.0 14400 < th dose independent rect. 7 4
958 284.25 wind 9.0 720 < th dose dependent rect. 7 2
980 284.28 radiation 10.0 14400 < th dose independent rect. 6 6
991 284.30 atmosphere 995.0 43200 < th dose dependent sin 14 NA
996 284.31 atmosphere 995.0 43200 < th dose independent rect. 21 1