FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0376100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.62 (0.0387) R2 : 0.257
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.679 (0.0982) R2dC : 0.0801 R2C : 0.0905
β3 : 1.06 (0.11) R2dE : 0.155 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.259 (0.0815) R2dN8 : 0.0186 R2N8 : 0.00666
σ : 0.726
deviance : 243.01
__
_____
C
peak time of C : 20.3
E
wheather : temperature
threshold : 27.26
memory length : 2654
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.67 0.715 4.63 0.238 0.683 1.17 0.476 -1.98 0.307 20.5 28.05 2653 -- --
232.07 0.71 4.57 0.687 0.668 0.958 0.454 -- 0.39 20.5 28.37 2620 -- --
232.35 0.71 4.62 0.246 0.683 1.17 -- -1.96 0.331 20.5 28.3 2619 -- --
232.64 0.71 4.58 0.656 0.691 0.954 -- -- 0.385 20.5 28.39 2608 -- --
250.71 0.737 4.66 -0.00183 -- 1.54 -- -2.62 0.106 -- 26.2 2160 -- --
268.21 0.768 4.6 0.942 0.75 -- 0.542 -- 0.301 21.1 -- -- -- --
269.23 0.768 4.6 0.923 0.75 -- -- -- 0.301 21 -- -- -- --
252.39 0.74 4.59 0.568 -- 1.26 -- -- 0.229 -- 26.1 2160 -- --
243.01 0.726 4.62 -- 0.679 1.06 -- -- 0.259 20.3 27.26 2654 -- --
301.57 0.811 4.58 0.925 -- -- -- -- 0.296 -- -- -- -- --
291.71 0.799 4.62 -- 0.749 -- -- -- 0.198 21.1 -- -- -- --
260.21 0.751 4.61 -- -- 1.38 -- -- 0.131 -- 25.6 2160 -- --
324.13 0.84 4.6 -- -- -- -- -- 0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.32 humidity 60.0 14400 < th dose independent rect. 17 1
2 225.54 radiation 1.0 43200 < th dose dependent rect. 21 6
4 226.08 radiation 1.0 43200 < th dose dependent rect. 21 3
5 226.14 humidity 60.0 14400 > th dose independent rect. 17 2
12 226.85 humidity 70.0 14400 < th dose dependent rect. 17 2
14 227.09 humidity 60.0 14400 > th dose independent rect. 17 15
17 227.11 humidity 60.0 14400 > th dose independent rect. 17 12
20 227.13 humidity 60.0 14400 > th dose independent rect. 17 6
21 227.14 humidity 60.0 14400 > th dose independent rect. 17 4
24 227.14 humidity 70.0 14400 < th dose dependent rect. 17 14
27 227.16 humidity 70.0 14400 < th dose dependent rect. 17 5
45 227.42 humidity 60.0 14400 < th dose independent rect. 17 15
47 227.54 humidity 60.0 14400 < th dose independent rect. 17 5
60 227.75 temperature 25.0 1440 > th dose dependent rect. 8 1
62 228.19 radiation 1.0 43200 < th dose dependent rect. 1 1
71 229.31 temperature 25.0 1440 > th dose dependent rect. 3 6
79 229.61 temperature 25.0 4320 > th dose independent rect. 7 1
83 229.78 wind 9.0 43200 > th dose dependent rect. 20 1
84 229.80 temperature 25.0 4320 < th dose independent rect. 7 1
89 229.86 atmosphere 995.0 43200 < th dose dependent rect. 15 1
135 230.08 wind 3.0 43200 > th dose dependent rect. 6 1
140 230.34 atmosphere 995.0 43200 < th dose independent rect. 15 1
141 230.40 atmosphere 995.0 43200 > th dose independent rect. 15 1
144 230.49 precipitation 0.1 43200 > th dose dependent rect. 20 1
150 230.66 atmosphere 995.0 43200 > th dose independent rect. 12 4
154 230.80 wind 9.0 43200 > th dose dependent rect. 20 10
160 231.01 wind 5.0 43200 > th dose independent rect. 6 1
183 231.28 atmosphere 995.0 43200 > th dose independent rect. 6 10
184 231.33 atmosphere 995.0 43200 > th dose independent rect. 12 10
186 231.36 wind 3.0 43200 > th dose dependent rect. 3 13
188 231.38 wind 9.0 43200 > th dose independent rect. 20 1
190 231.39 atmosphere 995.0 43200 < th dose dependent rect. 15 7
205 231.50 wind 5.0 43200 < th dose independent rect. 6 1
210 231.51 wind 5.0 43200 < th dose independent rect. 2 20
219 231.54 atmosphere 995.0 43200 < th dose independent rect. 13 9
229 231.57 wind 5.0 43200 < th dose independent rect. 14 22
237 231.60 wind 5.0 43200 < th dose independent rect. 2 16
239 231.61 wind 5.0 43200 > th dose independent rect. 2 19
251 231.65 wind 5.0 43200 < th dose independent rect. 3 14
266 231.70 atmosphere 995.0 43200 > th dose independent sin 22 NA
282 231.75 wind 5.0 43200 < th dose dependent rect. 9 1
292 231.77 wind 5.0 43200 > th dose independent rect. 2 16
304 231.83 wind 9.0 43200 < th dose independent rect. 20 1
346 231.90 humidity 70.0 4320 > th dose independent rect. 19 12
353 231.91 wind 5.0 43200 > th dose independent rect. 14 22
355 231.92 temperature 30.0 1440 < th dose independent rect. 3 9
372 231.95 atmosphere 995.0 43200 < th dose independent sin 22 NA
381 231.96 temperature 30.0 1440 < th dose independent rect. 7 5
385 231.96 temperature 30.0 1440 < th dose independent rect. 19 17
390 231.97 humidity 70.0 4320 > th dose independent rect. 19 10
412 232.00 wind 3.0 43200 > th dose dependent sin 2 NA
429 232.04 humidity 70.0 4320 > th dose independent rect. 19 4
478 232.17 wind 3.0 43200 > th dose dependent rect. 18 22
482 232.19 atmosphere 995.0 43200 < th dose independent rect. 5 14
496 232.21 wind 5.0 43200 < th dose independent rect. 9 23
511 232.23 temperature 30.0 1440 > th dose independent rect. 8 4
548 232.30 wind 5.0 43200 < th dose independent no NA NA
549 232.30 temperature 30.0 1440 > th dose independent rect. 11 1
559 232.33 wind 5.0 43200 < th dose independent rect. 18 23
563 232.33 wind 3.0 43200 > th dose dependent rect. 2 20
565 232.34 wind 5.0 43200 < th dose independent sin 1 NA
566 232.34 temperature 30.0 1440 < th dose independent rect. 11 1
569 232.34 wind 5.0 43200 < th dose independent rect. 11 23
575 232.35 atmosphere 1000.0 43200 > th dose independent rect. 9 1
577 232.35 wind 5.0 43200 > th dose independent rect. 9 23
579 232.36 atmosphere 1000.0 43200 < th dose independent rect. 9 1
597 232.38 temperature 30.0 1440 < th dose independent sin 8 NA
600 232.39 atmosphere 1000.0 43200 < th dose independent rect. 11 1
605 232.39 wind 5.0 43200 < th dose independent rect. 20 23
609 232.40 atmosphere 1000.0 43200 > th dose independent rect. 11 1
613 232.41 humidity 70.0 14400 < th dose independent rect. 19 13
625 232.45 wind 5.0 43200 > th dose independent sin 1 NA
632 232.47 wind 3.0 43200 > th dose dependent rect. 14 22
635 232.49 atmosphere 1000.0 43200 > th dose independent rect. 8 4
640 232.50 humidity 80.0 14400 > th dose independent rect. 17 1
641 232.50 atmosphere 1000.0 43200 < th dose independent rect. 8 4
650 232.52 wind 1.0 43200 > th dose independent rect. 8 2
658 232.52 wind 5.0 43200 > th dose independent rect. 11 23
669 232.55 wind 5.0 43200 > th dose independent no NA NA
676 232.55 wind 1.0 43200 > th dose dependent rect. 9 1
677 232.55 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
680 232.56 temperature 30.0 1440 > th dose independent sin 8 NA
686 232.56 wind 1.0 43200 < th dose dependent rect. 20 1
787 232.69 humidity 50.0 14400 < th dose independent rect. 16 19
789 232.69 wind 5.0 43200 > th dose independent rect. 20 23
809 232.72 temperature 30.0 1440 < th dose independent rect. 15 21
812 232.72 temperature 25.0 1440 > th dose dependent rect. 18 16
824 232.75 humidity 80.0 14400 < th dose independent rect. 17 1
831 232.76 wind 5.0 43200 > th dose independent rect. 18 23
844 232.79 atmosphere 995.0 43200 > th dose independent rect. 18 1
853 232.80 atmosphere 1000.0 43200 > th dose independent rect. 22 1
855 232.80 atmosphere 1000.0 43200 < th dose independent rect. 22 1
869 232.81 wind 3.0 43200 > th dose dependent no NA NA
879 232.82 temperature 25.0 1440 > th dose dependent rect. 20 14
907 232.88 wind 9.0 43200 < th dose dependent rect. 2 14
909 232.89 humidity 80.0 43200 > th dose independent rect. 23 1
910 232.89 atmosphere 995.0 43200 < th dose independent rect. 18 1
916 232.89 temperature 30.0 1440 > th dose independent rect. 15 21
918 232.89 atmosphere 995.0 43200 < th dose dependent rect. 18 1
937 232.92 wind 3.0 43200 > th dose dependent rect. 20 1
952 232.94 humidity 50.0 14400 > th dose dependent rect. 17 2