Os08g0375800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0375800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.26 | 0.544 | 6.25 | -0.59 | 1.06 | 1.62 | 0.668 | -0.607 | -0.686 | 17.7 | 23.58 | 143 | -- | -- |
| 134.39 | 0.54 | 6.24 | -0.509 | 1.07 | 1.56 | 0.565 | -- | -0.667 | 17.7 | 23.34 | 153 | -- | -- |
| 134.98 | 0.541 | 6.23 | -0.494 | 1.04 | 1.55 | -- | 0.14 | -0.662 | 17.4 | 23.22 | 212 | -- | -- |
| 134.99 | 0.541 | 6.24 | -0.517 | 1.04 | 1.57 | -- | -- | -0.669 | 17.4 | 23.25 | 212 | -- | -- |
| 167.11 | 0.602 | 6.23 | -0.623 | -- | 2.4 | -- | 0.185 | -0.73 | -- | 24.2 | 266 | -- | -- |
| 174.31 | 0.619 | 6.2 | -0.209 | 1.7 | -- | 1.07 | -- | -0.458 | 17.1 | -- | -- | -- | -- |
| 177.22 | 0.623 | 6.2 | -0.208 | 1.71 | -- | -- | -- | -0.453 | 17 | -- | -- | -- | -- |
| 166.84 | 0.602 | 6.23 | -0.661 | -- | 2.4 | -- | -- | -0.733 | -- | 24.2 | 266 | -- | -- |
| 141.44 | 0.554 | 6.21 | -- | 1.08 | 1.45 | -- | -- | -0.567 | 17.3 | 23.92 | 210 | -- | -- |
| 330.5 | 0.849 | 6.18 | -0.269 | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
| 178.35 | 0.625 | 6.19 | -- | 1.71 | -- | -- | -- | -0.43 | 17 | -- | -- | -- | -- |
| 178.01 | 0.621 | 6.21 | -- | -- | 2.3 | -- | -- | -0.644 | -- | 24.31 | 266 | -- | -- |
| 332.42 | 0.851 | 6.17 | -- | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 5 | 133.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 7 | 133.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 8 | 133.97 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 15 | 134.20 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 30 | 134.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 52 | 135.22 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 56 | 135.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 82 | 135.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 87 | 135.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 94 | 135.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 109 | 135.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 114 | 135.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 121 | 136.06 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 124 | 136.10 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 125 | 136.10 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 154 | 136.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 349 | 137.33 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 393 | 137.50 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 394 | 137.50 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 545 | 138.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 551 | 138.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 567 | 138.09 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 623 | 138.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 681 | 138.55 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 13 |
| 709 | 138.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 743 | 138.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 756 | 138.86 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 764 | 138.91 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 799 | 139.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 805 | 139.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 963 | 139.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |