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Os08g0374200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.68 (0.0184) R2 : 0.0316
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.149 (0.0386) R2dN8 : 0.0408 R2N8 : 0.0316
σ : 0.346
deviance : 54.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.5 0.246 8.74 -1.01 0.405 -0.403 -0.357 0.997 -0.0659 6.47 19.7 1510 -- --
27.87 0.246 8.72 -1 0.412 -0.701 -0.256 -- -0.0717 6.15 18.6 2749 -- --
27.72 0.245 8.74 -1.01 0.405 -0.412 -- 1.02 -0.0669 6.12 19.47 1508 -- --
28.02 0.247 8.72 -0.985 0.388 -0.717 -- -- -0.0619 6.28 18.52 2746 -- --
36.23 0.28 8.74 -1.01 -- -0.421 -- 1.02 -0.0619 -- 19.6 1448 -- --
34.67 0.276 8.69 -0.642 0.413 -- -0.486 -- 0.0682 6.55 -- -- -- --
35.1 0.277 8.69 -0.651 0.416 -- -- -- 0.0688 6.08 -- -- -- --
35.75 0.278 8.73 -0.999 -- -0.787 -- -- -0.0629 -- 18.45 2746 -- --
45.6 0.315 8.67 -- 0.413 -0.157 -- -- 0.121 6.2 19.7 870 -- --
44.07 0.31 8.69 -0.639 -- -- -- -- 0.0781 -- -- -- -- --
46.28 0.318 8.67 -- 0.407 -- -- -- 0.141 6.16 -- -- -- --
53.46 0.341 8.69 -- -- -0.179 -- -- 0.094 -- 22.31 1315 -- --
54.85 0.346 8.68 -- -- -- -- -- 0.149 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.76 temperature 20 720 > th dose independent rect. 22 13
2 25.76 temperature 15 720 > th dose dependent rect. 24 9
3 25.79 temperature 10 720 > th dose dependent sin 7 NA
7 25.83 temperature 20 720 > th dose independent rect. 2 8
11 25.84 temperature 15 720 > th dose dependent rect. 21 14
13 25.86 temperature 20 720 > th dose independent sin 7 NA
27 25.91 temperature 15 720 > th dose dependent rect. 2 7
50 26.03 temperature 10 720 > th dose dependent rect. 22 16
52 26.04 temperature 20 720 > th dose independent rect. 6 1
259 27.05 temperature 20 1440 < th dose independent rect. 5 2
282 27.19 temperature 20 1440 < th dose independent rect. 20 4
284 27.19 temperature 20 1440 < th dose independent rect. 17 15
288 27.20 temperature 20 1440 > th dose independent rect. 20 4
294 27.21 radiation 40 4320 < th dose independent rect. 18 14
299 27.22 temperature 20 1440 > th dose independent rect. 18 9
302 27.22 temperature 10 270 > th dose dependent rect. 4 15
304 27.23 temperature 20 1440 < th dose independent rect. 18 9
310 27.24 temperature 20 1440 > th dose independent rect. 19 6
318 27.25 temperature 20 1440 < th dose independent sin 12 NA
338 27.28 temperature 20 1440 > th dose independent sin 13 NA
408 27.35 humidity 90 14400 > th dose independent rect. 23 1
409 27.35 temperature 20 1440 > th dose independent rect. 21 2
474 27.41 humidity 90 14400 > th dose dependent rect. 5 2
512 27.46 radiation 40 4320 < th dose independent rect. 6 2
562 27.51 temperature 20 1440 < th dose independent rect. 3 6
616 27.55 humidity 90 14400 > th dose dependent rect. 23 19
641 27.58 temperature 10 43200 > th dose independent rect. 10 8
653 27.59 atmosphere 995 43200 < th dose independent rect. 22 16
671 27.60 radiation 40 4320 < th dose independent rect. 22 10
694 27.62 atmosphere 995 43200 > th dose independent rect. 22 16
717 27.63 humidity 90 14400 > th dose dependent rect. 23 1
738 27.64 atmosphere 995 43200 < th dose dependent rect. 17 17
766 27.66 temperature 20 270 > th dose independent rect. 3 16
770 27.66 atmosphere 995 43200 < th dose dependent sin 8 NA
772 27.66 atmosphere 995 43200 < th dose dependent rect. 22 12
803 27.69 humidity 90 14400 < th dose independent rect. 23 1
815 27.70 radiation 30 4320 > th dose independent rect. 7 1
831 27.70 atmosphere 995 43200 > th dose independent rect. 1 12
844 27.70 temperature 20 1440 < th dose dependent rect. 2 1
845 27.70 radiation 30 4320 > th dose dependent rect. 7 1
865 27.71 temperature 20 1440 < th dose independent no NA NA
868 27.71 atmosphere 995 43200 < th dose independent rect. 2 9
871 27.71 atmosphere 995 43200 < th dose independent rect. 1 11
879 27.71 humidity 90 14400 > th dose dependent rect. 2 14
883 27.72 temperature 20 1440 > th dose independent no NA NA
884 27.72 atmosphere 1015 43200 < th dose independent rect. 19 1
885 27.72 atmosphere 995 43200 < th dose independent rect. 4 5
887 27.72 atmosphere 995 43200 < th dose independent rect. 3 7
896 27.72 atmosphere 1015 43200 > th dose dependent rect. 12 1
897 27.72 atmosphere 995 43200 < th dose dependent rect. 2 7
901 27.73 atmosphere 995 43200 < th dose independent rect. 5 3
914 27.74 atmosphere 995 43200 > th dose independent rect. 2 9
920 27.74 humidity 90 14400 > th dose dependent sin 4 NA
933 27.75 temperature 20 1440 > th dose independent rect. 5 23
935 27.75 temperature 20 1440 < th dose independent rect. 5 23
953 27.76 humidity 90 14400 > th dose dependent rect. 12 16
978 27.78 temperature 20 14400 < th dose independent rect. 20 2
987 27.78 temperature 20 1440 > th dose independent rect. 1 23
990 27.78 temperature 20 1440 < th dose independent rect. 1 23
994 27.78 atmosphere 995 43200 < th dose dependent rect. 4 4