Os08g0374100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12).
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Os08g0374100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.53 | 0.179 | 11.9 | -0.757 | 0.503 | 0.572 | -0.533 | 1.37 | -0.196 | 9.43 | 31.21 | 275 | -- | -- |
| 16.29 | 0.188 | 11.9 | -0.53 | 0.508 | 0.643 | -0.534 | -- | -0.147 | 9.57 | 40 | 243 | -- | -- |
| 15.47 | 0.183 | 11.9 | -0.766 | 0.507 | 0.597 | -- | 1.47 | -0.193 | 9.51 | 31.4 | 226 | -- | -- |
| 17.33 | 0.194 | 11.9 | -0.551 | 0.543 | 0.634 | -- | -- | -0.15 | 9.5 | 59.41 | 171 | -- | -- |
| 26.59 | 0.24 | 11.9 | -0.632 | -- | 0.911 | -- | 0.946 | -0.14 | -- | 108.9 | 572 | -- | -- |
| 20.81 | 0.214 | 11.9 | -0.669 | 0.585 | -- | -0.432 | -- | -0.237 | 8.42 | -- | -- | -- | -- |
| 21.39 | 0.217 | 11.9 | -0.683 | 0.588 | -- | -- | -- | -0.238 | 8.31 | -- | -- | -- | -- |
| 27.2 | 0.243 | 11.9 | -0.462 | -- | 0.93 | -- | -- | -0.0944 | -- | 113.1 | 592 | -- | -- |
| 24.48 | 0.23 | 11.9 | -- | 0.516 | 0.894 | -- | -- | -0.0567 | 10.1 | 41.66 | 218 | -- | -- |
| 40.55 | 0.298 | 11.9 | -0.679 | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
| 33.69 | 0.272 | 11.9 | -- | 0.585 | -- | -- | -- | -0.161 | 8.39 | -- | -- | -- | -- |
| 32.12 | 0.264 | 11.9 | -- | -- | 1.08 | -- | -- | -0.0042 | -- | 31.7 | 608 | -- | -- |
| 52.73 | 0.339 | 11.9 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 2 | 14.23 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 5 | 14.33 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 11 | 14.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 13 | 14.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 16 | 14.45 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 19 | 14.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 23 | 14.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 24 | 14.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 28 | 14.50 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 31 | 14.52 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 33 | 14.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 34 | 14.54 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 2 |
| 35 | 14.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 41 | 14.56 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 50 | 14.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 56 | 14.60 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 63 | 14.62 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 67 | 14.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 70 | 14.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 96 | 14.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 98 | 14.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 119 | 14.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 133 | 14.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 144 | 14.79 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 150 | 14.80 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 157 | 14.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 186 | 14.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 244 | 14.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 419 | 15.11 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 564 | 15.21 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 588 | 15.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 945 | 15.41 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 4 |