Os08g0373400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0373400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.75 | 0.395 | 3.11 | -0.0971 | 0.143 | -1.19 | 0.155 | 4.39 | 0.063 | 8.67 | 50.13 | 9 | -- | -- |
| 75.72 | 0.405 | 3.1 | -0.103 | 0.136 | -0.539 | -0.0925 | -- | 0.055 | 8.6 | 51 | 6 | -- | -- |
| 70.09 | 0.39 | 3.11 | -0.0835 | 0.139 | -1.15 | -- | 4.17 | 0.0575 | 8.44 | 50.22 | 7 | -- | -- |
| 75.71 | 0.405 | 3.1 | -0.105 | 0.14 | -0.546 | -- | -- | 0.0547 | 7.94 | 51.03 | 6 | -- | -- |
| 70.36 | 0.391 | 3.11 | -0.0746 | -- | -1.09 | -- | 3.96 | 0.0681 | -- | 50.33 | 6 | -- | -- |
| 79.36 | 0.418 | 3.11 | -0.0983 | 0.146 | -- | -0.123 | -- | 0.0333 | 9.44 | -- | -- | -- | -- |
| 79.42 | 0.417 | 3.11 | -0.103 | 0.147 | -- | -- | -- | 0.0331 | 9.42 | -- | -- | -- | -- |
| 76.78 | 0.408 | 3.11 | -0.104 | -- | -0.546 | -- | -- | 0.0565 | -- | 51.1 | 6 | -- | -- |
| 76 | 0.406 | 3.1 | -- | 0.14 | -0.545 | -- | -- | 0.0664 | 8 | 51.28 | 6 | -- | -- |
| 80.68 | 0.42 | 3.11 | -0.104 | -- | -- | -- | -- | 0.0336 | -- | -- | -- | -- | -- |
| 79.7 | 0.418 | 3.11 | -- | 0.147 | -- | -- | -- | 0.0446 | 9.48 | -- | -- | -- | -- |
| 77.07 | 0.409 | 3.1 | -- | -- | -0.546 | -- | -- | 0.068 | -- | 51.53 | 6 | -- | -- |
| 80.97 | 0.42 | 3.11 | -- | -- | -- | -- | -- | 0.0451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.61 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 61.09 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 3 | 61.25 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 18 | 61.62 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 28 | 61.62 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 41 | 62.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 49 | 64.07 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 50 | 64.17 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 157 | 64.82 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 159 | 64.82 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 162 | 65.23 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 402 | 65.58 | humidity | 50 | 10 | > th | dose independent | sin | 7 | NA |
| 575 | 66.88 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 579 | 66.98 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 616 | 67.58 | humidity | 60 | 270 | < th | dose independent | rect. | 10 | 1 |
| 669 | 68.44 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 722 | 68.69 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 772 | 69.43 | humidity | 60 | 270 | < th | dose independent | rect. | 19 | 16 |
| 823 | 69.85 | humidity | 60 | 720 | > th | dose independent | rect. | 3 | 8 |
| 824 | 69.86 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 827 | 69.87 | humidity | 80 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 829 | 69.90 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 853 | 69.98 | humidity | 60 | 270 | < th | dose independent | sin | 7 | NA |
| 859 | 70.04 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 893 | 70.09 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 895 | 70.09 | humidity | 60 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 901 | 70.15 | humidity | 60 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 914 | 70.26 | humidity | 60 | 270 | > th | dose independent | sin | 6 | NA |
| 916 | 70.30 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 920 | 70.33 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 924 | 70.34 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 933 | 70.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 934 | 70.34 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 960 | 70.35 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |