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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0372900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rhodopsin (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0241) R2 : 4.72e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00744 (0.0507) R2dN8 : 6.09e-05 R2N8 : 4.72e-05
σ : 0.454
deviance : 94.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.68 0.45 3.72 1.63 0.0825 52.4 0.0556 108 0.0336 20.8 14.96 4301 -- --
93.11 0.453 3.02 -0.012 0.0793 0.694 0.0783 -- -0.00446 20.5 14.96 4301 -- --
91.69 0.446 3.72 1.63 0.0791 52.5 -- 108 0.0362 20.8 14.96 4293 -- --
92.25 0.447 3.01 0.106 0.0951 0.536 -- -- 0.0332 21.3 16.87 4962 -- --
92.06 0.447 3.71 1.59 -- 53.6 -- 110 0.037 -- 14.93 4287 -- --
94.03 0.455 3.02 -0.0408 0.087 -- 0.00681 -- -0.0114 20.9 -- -- -- --
94.03 0.454 3.02 -0.041 0.087 -- -- -- -0.0114 20.9 -- -- -- --
92.7 0.448 3.01 0.109 -- 0.536 -- -- 0.03 -- 16.9 4941 -- --
92.48 0.448 3.01 -- 0.0887 0.465 -- -- 0.0118 21.1 16.5 4937 -- --
94.46 0.454 3.02 -0.041 -- -- -- -- -0.012 -- -- -- -- --
94.07 0.454 3.02 -- 0.0871 -- -- -- -0.0068 20.8 -- -- -- --
92.93 0.449 3.01 -- -- 0.452 -- -- 0.0113 -- 16.6 4916 -- --
94.5 0.454 3.02 -- -- -- -- -- -0.00744 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.67 atmosphere 1000.0 90 < th dose independent rect. 17 2
2 83.67 atmosphere 1000.0 90 < th dose dependent rect. 17 2
3 83.68 atmosphere 1000.0 10 < th dose independent rect. 17 1
15 83.68 atmosphere 1000.0 10 < th dose dependent rect. 17 1
58 86.78 wind 3.0 30 < th dose dependent rect. 15 8
66 87.96 wind 3.0 90 < th dose independent rect. 14 8
67 88.07 wind 1.0 90 < th dose dependent rect. 15 1
69 88.10 wind 1.0 90 < th dose independent rect. 15 1
72 88.13 wind 3.0 10 < th dose dependent rect. 15 2
103 88.80 wind 3.0 30 < th dose dependent rect. 12 11
104 88.81 wind 3.0 10 < th dose independent rect. 15 1
121 89.14 wind 7.0 270 > th dose independent rect. 12 4
217 90.06 humidity 90.0 90 > th dose independent rect. 14 1
221 90.06 humidity 90.0 90 > th dose dependent rect. 14 1
258 90.18 wind 7.0 270 > th dose dependent rect. 14 2
269 90.24 wind 5.0 270 > th dose dependent rect. 12 4
273 90.32 temperature 30.0 90 > th dose independent rect. 16 1
275 90.35 precipitation 0.1 90 > th dose independent rect. 14 3
276 90.35 temperature 15.0 720 > th dose independent rect. 13 16
277 90.35 temperature 15.0 90 > th dose independent rect. 5 23
291 90.48 precipitation 0.1 90 > th dose independent rect. 14 1
295 90.48 precipitation 0.1 90 > th dose dependent rect. 14 1
311 90.58 temperature 15.0 720 > th dose independent rect. 17 8
355 90.73 atmosphere 1005.0 90 > th dose independent rect. 4 1
369 90.77 temperature 15.0 720 > th dose independent rect. 17 16
381 90.84 temperature 25.0 10 > th dose independent rect. 15 14
389 90.86 temperature 30.0 90 > th dose dependent rect. 8 1
414 90.91 temperature 30.0 90 > th dose independent rect. 8 1
454 90.99 temperature 15.0 720 > th dose independent rect. 21 8
462 91.02 humidity 50.0 14400 > th dose independent rect. 19 9
468 91.03 atmosphere 1000.0 90 > th dose dependent rect. 4 1
476 91.06 radiation 20.0 14400 < th dose independent rect. 5 1
493 91.09 temperature 25.0 10 > th dose independent rect. 15 18
519 91.16 temperature 20.0 90 > th dose dependent rect. 4 1
524 91.17 temperature 15.0 720 > th dose independent rect. 5 16
529 91.18 humidity 80.0 90 > th dose independent rect. 4 1
532 91.18 temperature 15.0 30 > th dose independent rect. 23 16
542 91.21 temperature 15.0 720 > th dose independent rect. 1 16
543 91.21 temperature 10.0 90 > th dose dependent rect. 4 1
547 91.22 wind 9.0 90 < th dose independent rect. 5 23
552 91.24 wind 5.0 90 < th dose independent rect. 4 1
557 91.24 radiation 1.0 90 < th dose dependent rect. 4 1
560 91.24 temperature 10.0 30 > th dose dependent rect. 23 16
576 91.27 temperature 10.0 90 > th dose independent rect. 4 1
578 91.27 temperature 30.0 90 < th dose independent rect. 4 1
579 91.27 humidity 50.0 90 > th dose independent rect. 4 1
583 91.27 atmosphere 1010.0 90 < th dose independent rect. 4 1
585 91.27 radiation 1.0 90 < th dose independent rect. 4 1
597 91.28 precipitation 0.1 90 < th dose independent rect. 4 1
598 91.28 temperature 25.0 720 > th dose dependent rect. 22 1
599 91.28 precipitation 0.1 90 < th dose dependent rect. 4 1
608 91.30 wind 9.0 90 < th dose dependent rect. 4 1
609 91.30 radiation 1.0 4320 < th dose dependent rect. 16 1
618 91.32 wind 3.0 30 < th dose independent rect. 19 4
636 91.35 humidity 50.0 90 > th dose dependent rect. 4 1
639 91.36 humidity 90.0 1440 > th dose independent rect. 8 12
670 91.39 temperature 10.0 30 > th dose dependent rect. 5 10
674 91.40 radiation 20.0 10 < th dose independent rect. 9 21
675 91.40 wind 7.0 30 > th dose dependent rect. 15 1
682 91.42 temperature 15.0 720 > th dose independent rect. 9 8
686 91.43 radiation 20.0 10 < th dose independent rect. 4 14
687 91.43 wind 9.0 720 < th dose independent rect. 13 16
696 91.44 humidity 90.0 1440 > th dose dependent rect. 8 12
698 91.46 humidity 50.0 14400 > th dose independent rect. 18 1
703 91.46 radiation 30.0 90 > th dose dependent rect. 15 18
705 91.47 temperature 20.0 1440 < th dose independent rect. 17 2
708 91.47 radiation 40.0 90 > th dose independent rect. 15 18
716 91.48 temperature 20.0 1440 > th dose independent rect. 17 2
719 91.48 wind 9.0 720 < th dose independent rect. 17 8
721 91.48 temperature 15.0 90 > th dose independent rect. 16 23
725 91.48 radiation 20.0 10 < th dose dependent rect. 4 14
750 91.52 radiation 20.0 10 < th dose independent rect. 9 9
751 91.52 humidity 50.0 14400 > th dose independent rect. 18 12
775 91.54 temperature 20.0 1440 < th dose dependent rect. 17 3
817 91.58 atmosphere 1005.0 30 > th dose independent rect. 4 6
826 91.58 wind 5.0 90 < th dose independent rect. 14 15
833 91.58 radiation 1.0 30 < th dose dependent rect. 5 23
842 91.60 radiation 40.0 90 > th dose independent rect. 8 1
861 91.60 radiation 1.0 30 < th dose independent rect. 5 23
866 91.61 temperature 10.0 720 > th dose independent rect. 5 8
867 91.61 atmosphere 995.0 720 > th dose independent rect. 5 8
868 91.61 atmosphere 1015.0 720 < th dose independent rect. 5 8
878 91.62 radiation 30.0 720 < th dose independent rect. 17 8
885 91.62 wind 3.0 30 < th dose dependent rect. 19 4
889 91.62 temperature 15.0 4320 < th dose dependent rect. 3 20
901 91.63 temperature 15.0 720 > th dose independent rect. 5 23
906 91.63 temperature 15.0 4320 < th dose dependent rect. 4 18
913 91.64 humidity 90.0 1440 < th dose independent rect. 8 11
915 91.64 temperature 30.0 30 < th dose dependent rect. 4 1
936 91.65 radiation 1.0 30 > th dose independent rect. 15 1
945 91.65 precipitation 0.1 90 > th dose independent rect. 10 6
965 91.66 wind 9.0 720 < th dose independent rect. 17 16
973 91.66 temperature 20.0 30 > th dose dependent rect. 10 5
981 91.67 wind 7.0 720 < th dose independent rect. 21 8
990 91.67 radiation 1.0 30 > th dose dependent rect. 15 1