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Os08g0371200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.35 (0.0648) R2 : 0.513
β1 : -3.4 (0.261) R2dD : 0.269 R2D : -0.084
β2 : 0.494 (0.143) R2dC : 0.013 R2C : -0.0124
β3 : -0.881 (0.291) R2dE : 0.0135 R2E : -0.094
β4 : -4.12 (0.547) R2dD*C : 0.0623 R2D*C : 0.041
β5 : -13.4 (1.33) R2dD*E : 0.166 R2D*E : 0.0264
γ1 : -1.88 (0.137) R2dN8 : 0.316 R2N8 : 0.21
σ : 1.12
deviance : 567.54
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C
peak time of C : 22.9
E
wheather : radiation
threshold : 0.9021
memory length : 3827
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
567.54 1.12 8.35 -3.4 0.494 -0.881 -4.12 -13.4 -1.88 22.9 0.9021 3827 18 1.16
661.59 1.2 8.55 -2 1.06 -0.738 -3.91 -- -1.95 22.9 -22.54 23737 18.2 3.02
614.79 1.15 8.33 -3.26 0.696 -0.658 -- -14 -1.84 20.8 0.9022 3591 18 0.95
749.75 1.28 8.56 -1.97 1.08 -0.716 -- -- -1.98 22.1 -22.41 20842 18.3 2.84
643.02 1.18 8.33 -3.1 -- -0.641 -- -14 -1.82 -- 0.9099 3536 18 0.951
693.5 1.23 8.57 -2.19 0.221 -- -4.91 -- -2.04 0.0224 -- -- -- --
754.93 1.29 8.57 -1.97 0.943 -- -- -- -2 19 -- -- -- --
762.23 1.29 8.51 -2.13 -- -0.846 -- -- -1.97 -- -0.0009764 5387 20.9 4.28
850.1 1.36 8.57 -- 1.16 -0.648 -- -- -1.82 21.7 -25.4 20853 18.3 2.18
801.7 1.32 8.55 -1.98 -- -- -- -- -2.01 -- -- -- -- --
856.72 1.37 8.52 -- 0.965 -- -- -- -1.78 18.9 -- -- -- --
866.39 1.37 8.51 -- -- -0.838 -- -- -1.97 -- -0.6456 5336 21.2 4.37
905.56 1.4 8.5 -- -- -- -- -- -1.79 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 563.55 radiation 1 14400 < th dose dependent rect. 4 1
5 566.90 wind 1 43200 < th dose dependent rect. 17 13
7 568.90 wind 1 43200 < th dose dependent rect. 20 10
9 569.36 wind 1 43200 < th dose dependent rect. 22 7
12 569.94 wind 1 43200 < th dose independent rect. 22 6
16 571.57 radiation 1 14400 < th dose dependent rect. 21 8
23 573.20 wind 1 43200 < th dose independent rect. 20 9
27 574.86 temperature 20 14400 < th dose dependent rect. 18 7
29 575.00 temperature 20 14400 < th dose dependent rect. 20 5
40 575.76 temperature 20 14400 < th dose independent rect. 23 2
46 576.09 temperature 20 14400 < th dose independent rect. 9 18
57 576.50 temperature 20 14400 < th dose independent rect. 5 21
73 576.76 temperature 20 14400 < th dose dependent sin 17 NA
122 577.65 temperature 20 14400 < th dose independent rect. 12 22
130 577.79 temperature 20 14400 < th dose independent rect. 21 23
138 577.84 temperature 20 14400 > th dose independent rect. 4 22
145 577.89 temperature 20 14400 < th dose independent no NA NA
153 577.97 temperature 20 14400 < th dose independent sin 15 NA
167 578.05 temperature 20 14400 < th dose independent rect. 15 23
170 578.10 temperature 20 14400 < th dose independent rect. 23 23
177 578.13 temperature 20 14400 < th dose independent rect. 18 23
203 578.37 wind 1 43200 < th dose independent rect. 18 11
217 578.50 wind 1 43200 < th dose dependent sin 11 NA
228 578.61 temperature 20 14400 > th dose independent rect. 23 2
251 578.79 temperature 20 14400 < th dose dependent rect. 23 1
254 578.84 temperature 20 14400 > th dose independent rect. 12 22
256 578.86 temperature 20 14400 > th dose independent rect. 9 18
262 578.89 temperature 20 14400 > th dose independent rect. 9 22
279 579.00 temperature 20 14400 > th dose independent rect. 21 23
281 579.02 temperature 20 14400 > th dose independent no NA NA
298 579.10 temperature 20 14400 > th dose independent rect. 23 23
316 579.17 temperature 20 14400 > th dose independent rect. 15 23
326 579.23 temperature 20 14400 > th dose independent rect. 19 23
329 579.24 temperature 20 14400 > th dose independent rect. 12 16
471 580.07 temperature 20 14400 > th dose independent sin 13 NA
612 581.39 radiation 1 4320 > th dose independent rect. 18 1
623 581.44 radiation 1 4320 < th dose independent rect. 18 9
649 581.61 temperature 30 720 < th dose independent rect. 15 4
659 581.72 radiation 1 4320 < th dose independent rect. 18 3
680 581.97 wind 1 43200 < th dose independent rect. 17 13
683 582.03 wind 1 43200 < th dose dependent rect. 1 2
744 582.81 wind 5 720 < th dose independent rect. 12 22
767 583.10 wind 1 43200 > th dose independent rect. 19 11
788 583.46 wind 9 43200 > th dose independent rect. 14 1
828 583.98 wind 3 720 > th dose dependent rect. 22 20
831 584.08 temperature 20 14400 > th dose independent sin 23 NA
842 584.21 temperature 30 720 < th dose independent rect. 16 2
849 584.33 temperature 25 14400 < th dose dependent rect. 13 1
860 584.45 temperature 20 14400 < th dose dependent rect. 12 22
869 584.54 temperature 30 720 < th dose independent rect. 15 8
870 584.57 temperature 20 14400 < th dose dependent no NA NA
884 584.68 temperature 20 14400 < th dose dependent rect. 15 23
888 584.71 temperature 20 14400 < th dose independent rect. 18 1
890 584.72 wind 1 43200 > th dose independent rect. 22 7
962 585.21 wind 5 720 > th dose independent rect. 21 21
997 585.50 temperature 20 14400 > th dose independent rect. 5 4