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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0369800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carotenoid oxygenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.035) R2 : 0.0962
β1 : -0.823 (0.128) R2dD : 0.0848 R2D : 0.0908
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.107 (0.0747) R2dN8 : 0.00544 R2N8 : 0.0114
σ : 0.656
deviance : 197.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.07 0.613 2.98 -0.628 0.458 0.78 -1.56 -2.9 0.122 15.3 3.899 2384 -- --
173.96 0.614 3.03 -0.548 0.473 1.11 -1.32 -- 0.0917 15.3 3.909 2358 -- --
176.74 0.619 2.99 -0.677 0.427 0.79 -- -2.62 0.133 14.9 3.9 2216 -- --
178.96 0.623 3.03 -0.589 0.461 1.12 -- -- 0.0613 14.4 3.894 2322 -- --
186.18 0.636 2.99 -0.659 -- 0.68 -- -2.3 0.1 -- 3.881 3071 -- --
184.49 0.637 3.02 -0.796 0.373 -- -1.45 -- 0.124 16.4 -- -- -- --
189.96 0.645 3.03 -0.807 0.365 -- -- -- 0.117 15.7 -- -- -- --
188.7 0.64 3.04 -0.581 -- 0.981 -- -- 0.0727 -- 3.898 3040 -- --
186.65 0.636 3.03 -- 0.49 1.41 -- -- 0.105 14.4 3.81 2321 -- --
197.34 0.656 3.02 -0.823 -- -- -- -- 0.107 -- -- -- -- --
207.14 0.673 3.01 -- 0.381 -- -- -- 0.207 15.6 -- -- -- --
196.96 0.654 3.03 -- -- 1.32 -- -- 0.0954 -- 3.88 3041 -- --
215.19 0.685 3 -- -- -- -- -- 0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.56 humidity 50.0 30 > th dose independent rect. 13 18
2 164.80 temperature 30.0 30 < th dose independent rect. 13 18
3 165.03 wind 9.0 10 < th dose independent rect. 13 18
5 165.25 radiation 40.0 10 < th dose independent rect. 13 18
9 165.54 humidity 70.0 10 > th dose independent rect. 13 18
12 165.94 humidity 90.0 10 < th dose independent rect. 13 9
13 166.01 atmosphere 1000.0 10 > th dose independent rect. 13 18
16 166.08 precipitation 0.1 10 < th dose independent rect. 7 6
17 166.08 precipitation 0.1 10 < th dose dependent rect. 7 6
18 166.09 temperature 10.0 10 > th dose independent rect. 7 6
20 166.09 atmosphere 995.0 10 > th dose independent rect. 7 6
21 166.09 atmosphere 1015.0 10 < th dose independent rect. 7 6
22 166.09 temperature 10.0 10 > th dose independent rect. 13 18
24 166.11 precipitation 0.1 30 < th dose independent rect. 13 18
25 166.11 precipitation 0.1 30 < th dose dependent rect. 13 18
33 166.17 atmosphere 995.0 4320 > th dose independent rect. 8 6
42 166.23 temperature 10.0 1440 > th dose independent rect. 8 6
46 166.23 temperature 10.0 1440 > th dose independent rect. 14 18
50 166.30 radiation 1.0 30 > th dose independent rect. 7 6
51 166.36 wind 1.0 30 > th dose independent rect. 7 6
58 166.89 radiation 40.0 10 < th dose dependent rect. 13 18
59 166.90 humidity 50.0 30 > th dose independent rect. 7 6
63 167.08 wind 9.0 30 < th dose independent rect. 7 6
70 167.51 atmosphere 1015.0 10 < th dose independent rect. 13 18
78 167.70 radiation 1.0 90 > th dose independent rect. 4 1
88 167.70 radiation 1.0 90 > th dose dependent rect. 4 1
98 167.71 wind 1.0 10 < th dose dependent rect. 6 1
118 168.16 atmosphere 995.0 30 > th dose dependent rect. 7 6
172 168.71 wind 3.0 270 > th dose independent rect. 11 8
215 168.89 wind 1.0 10 < th dose independent rect. 6 1
221 168.97 wind 3.0 30 > th dose independent rect. 13 9
235 169.20 humidity 50.0 10 > th dose dependent rect. 13 18
236 169.21 wind 9.0 270 < th dose independent rect. 9 22
248 169.37 temperature 30.0 30 < th dose independent rect. 13 6
249 169.38 wind 9.0 10 < th dose independent rect. 13 6
251 169.38 humidity 50.0 30 > th dose independent rect. 13 6
257 169.45 temperature 30.0 30 < th dose independent rect. 7 6
270 169.59 humidity 50.0 270 > th dose independent rect. 9 22
273 169.65 temperature 10.0 10 > th dose dependent rect. 13 18
276 169.69 humidity 50.0 10 > th dose dependent rect. 13 6
297 169.81 temperature 10.0 10 > th dose dependent rect. 7 6
308 169.85 precipitation 0.1 270 < th dose independent rect. 9 22
309 169.85 precipitation 0.1 270 < th dose dependent rect. 9 22
310 169.86 wind 7.0 270 < th dose independent rect. 13 1
313 169.89 humidity 60.0 270 > th dose independent rect. 11 7
350 170.13 wind 3.0 90 < th dose independent rect. 24 14
352 170.15 wind 3.0 30 > th dose independent rect. 13 6
356 170.18 wind 7.0 270 < th dose independent rect. 7 2
358 170.19 wind 1.0 90 > th dose independent rect. 21 15
362 170.22 wind 5.0 90 < th dose dependent rect. 24 7
366 170.28 atmosphere 995.0 10 > th dose dependent rect. 13 18
382 170.42 wind 1.0 10 > th dose independent rect. 19 18
383 170.44 radiation 40.0 10 < th dose independent rect. 12 7
385 170.45 humidity 50.0 30 > th dose independent rect. 13 9
387 170.47 wind 1.0 270 > th dose independent rect. 7 2
391 170.49 atmosphere 1000.0 270 > th dose independent rect. 7 2
396 170.50 temperature 10.0 270 > th dose independent rect. 7 2
398 170.50 humidity 50.0 270 > th dose independent rect. 7 2
400 170.50 atmosphere 1015.0 270 < th dose independent rect. 7 2
401 170.50 temperature 10.0 270 > th dose independent rect. 9 22
408 170.54 atmosphere 995.0 270 > th dose independent rect. 9 22
409 170.56 wind 3.0 270 > th dose independent rect. 13 1
410 170.56 precipitation 0.1 270 < th dose independent rect. 7 2
412 170.56 precipitation 0.1 270 < th dose dependent rect. 7 2
414 170.57 wind 1.0 10 > th dose independent rect. 22 15
416 170.58 temperature 30.0 270 < th dose independent rect. 7 2
417 170.58 wind 9.0 10 < th dose independent rect. 13 9
422 170.62 radiation 10.0 10 > th dose independent rect. 15 22
424 170.63 wind 1.0 90 > th dose independent rect. 19 17
426 170.65 atmosphere 1000.0 10 > th dose independent rect. 13 6
428 170.65 atmosphere 1000.0 30 > th dose independent rect. 19 18
430 170.66 humidity 80.0 10 > th dose independent rect. 24 11
436 170.69 temperature 30.0 90 < th dose independent rect. 12 9
441 170.72 precipitation 0.1 10 < th dose independent rect. 13 6
444 170.72 precipitation 0.1 10 < th dose dependent rect. 13 6
446 170.73 temperature 10.0 30 > th dose independent rect. 13 6
449 170.73 atmosphere 1010.0 30 < th dose independent rect. 13 6
451 170.73 temperature 10.0 30 > th dose independent rect. 19 18
462 170.75 precipitation 0.1 10 < th dose independent rect. 19 18
463 170.75 precipitation 0.1 10 < th dose dependent rect. 19 18
466 170.76 wind 5.0 10 < th dose dependent rect. 24 7
469 170.79 humidity 90.0 270 < th dose independent rect. 13 1
472 170.79 temperature 30.0 270 < th dose independent rect. 10 21
481 170.86 wind 9.0 90 < th dose independent rect. 12 9
495 170.91 wind 5.0 90 < th dose dependent rect. 24 14
504 170.98 wind 3.0 90 < th dose independent rect. 24 7
505 170.98 radiation 1.0 10 > th dose independent rect. 13 18
507 170.99 radiation 40.0 270 < th dose independent rect. 7 2
509 171.00 temperature 10.0 1440 > th dose independent rect. 14 6
512 171.00 temperature 10.0 1440 > th dose independent rect. 20 18
515 171.00 atmosphere 995.0 1440 > th dose independent rect. 20 18
518 171.01 atmosphere 995.0 30 > th dose dependent rect. 13 6
521 171.02 humidity 60.0 270 > th dose independent rect. 12 5
543 171.10 temperature 25.0 270 < th dose independent rect. 12 2
546 171.10 wind 5.0 270 < th dose independent rect. 14 9
561 171.17 precipitation 0.1 10 < th dose independent rect. 22 15
562 171.17 precipitation 0.1 10 < th dose dependent rect. 22 15
565 171.18 precipitation 0.1 10 < th dose independent rect. 13 9
567 171.18 precipitation 0.1 10 < th dose dependent rect. 13 9
572 171.21 atmosphere 1005.0 90 > th dose independent rect. 5 1
578 171.23 atmosphere 995.0 270 > th dose dependent rect. 7 2
582 171.24 atmosphere 1000.0 10 > th dose independent rect. 13 9
583 171.24 wind 3.0 4320 > th dose independent rect. 20 11
592 171.27 wind 9.0 30 < th dose independent rect. 19 18
596 171.29 temperature 10.0 10 > th dose independent rect. 13 9
598 171.29 atmosphere 1010.0 10 < th dose independent rect. 13 9
600 171.29 temperature 10.0 10 > th dose independent rect. 22 15
601 171.29 atmosphere 995.0 10 > th dose independent rect. 22 15
602 171.30 wind 5.0 1440 < th dose independent rect. 14 9
603 171.30 humidity 50.0 30 > th dose independent rect. 19 18
609 171.34 wind 5.0 1440 < th dose independent rect. 14 3
633 171.38 radiation 40.0 10 < th dose independent rect. 12 10
647 171.44 humidity 60.0 270 > th dose independent rect. 24 17
648 171.45 wind 5.0 1440 < th dose independent rect. 14 6
651 171.45 atmosphere 995.0 10 > th dose dependent rect. 13 9
653 171.47 wind 5.0 1440 > th dose independent rect. 14 9
656 171.49 wind 5.0 1440 < th dose independent rect. 14 17
665 171.52 wind 5.0 1440 < th dose independent rect. 14 13
669 171.53 humidity 50.0 270 > th dose dependent rect. 13 1
676 171.55 atmosphere 1010.0 90 < th dose independent rect. 12 9
687 171.59 wind 5.0 1440 > th dose independent rect. 14 3
720 171.63 wind 5.0 1440 > th dose independent rect. 14 17
727 171.64 wind 5.0 1440 > th dose independent rect. 14 6
734 171.65 wind 9.0 270 < th dose independent rect. 1 14
737 171.66 humidity 70.0 10 > th dose independent rect. 13 6
747 171.69 wind 5.0 1440 > th dose independent rect. 14 13
749 171.69 humidity 60.0 90 > th dose dependent rect. 24 7
755 171.71 wind 1.0 30 > th dose independent rect. 13 18
766 171.74 wind 3.0 4320 < th dose independent rect. 20 11
787 171.78 temperature 10.0 1440 > th dose independent rect. 14 9
792 171.78 temperature 10.0 1440 > th dose independent rect. 23 15
795 171.78 atmosphere 995.0 1440 > th dose independent rect. 23 15
799 171.78 atmosphere 995.0 90 > th dose dependent rect. 24 7
800 171.79 humidity 80.0 4320 > th dose independent rect. 22 1
813 171.82 radiation 30.0 10 < th dose independent rect. 12 22
816 171.82 wind 1.0 10 > th dose dependent rect. 22 15
857 171.88 wind 1.0 30 > th dose dependent rect. 13 9
871 171.90 wind 7.0 270 < th dose dependent rect. 14 9
877 171.91 wind 7.0 1440 < th dose dependent rect. 14 17
884 171.93 humidity 70.0 90 > th dose dependent rect. 24 10
885 171.94 humidity 50.0 270 > th dose independent rect. 13 1
888 171.95 wind 9.0 270 < th dose independent rect. 10 9
906 171.98 humidity 50.0 90 > th dose independent rect. 21 15
957 172.06 temperature 30.0 90 < th dose dependent rect. 12 5
980 172.12 wind 3.0 30 > th dose independent rect. 4 9
1000 172.17 wind 9.0 10 < th dose independent rect. 22 15