Os08g0366000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoenolpyruvate carboxylase.
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Os08g0366000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphoenolpyruvate carboxylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.21 | 0.399 | 13.8 | 0.857 | 1.33 | -1.18 | 0.56 | 4.15 | 0.255 | 0.867 | 25.59 | 1536 | -- | -- |
| 77.92 | 0.411 | 13.9 | -0.15 | 1.37 | -0.764 | 0.605 | -- | 0.168 | 1.18 | 22.5 | 7482 | -- | -- |
| 73.05 | 0.398 | 13.8 | 0.881 | 1.31 | -1.29 | -- | 4.77 | 0.267 | 0.62 | 25.59 | 1726 | -- | -- |
| 78.56 | 0.413 | 13.9 | -0.21 | 1.31 | -0.756 | -- | -- | 0.141 | 0.926 | 25 | 7521 | -- | -- |
| 133.48 | 0.541 | 13.9 | 0.0781 | -- | -1.99 | -- | 3.06 | 0.102 | -- | 25.59 | 1726 | -- | -- |
| 100.53 | 0.47 | 14 | -0.494 | 1.31 | -- | 0.515 | -- | -0.0769 | 0.952 | -- | -- | -- | -- |
| 101.65 | 0.472 | 14 | -0.513 | 1.31 | -- | -- | -- | -0.0798 | 0.968 | -- | -- | -- | -- |
| 126.97 | 0.527 | 13.9 | -0.15 | -- | -1.81 | -- | -- | 0.201 | -- | 22.79 | 35 | -- | -- |
| 79.45 | 0.415 | 13.9 | -- | 1.35 | -0.83 | -- | -- | 0.223 | 0.908 | 22.69 | 7570 | -- | -- |
| 208.46 | 0.675 | 13.9 | -0.464 | -- | -- | -- | -- | -0.0547 | -- | -- | -- | -- | -- |
| 108.58 | 0.487 | 13.9 | -- | 1.3 | -- | -- | -- | -0.0227 | 0.951 | -- | -- | -- | -- |
| 127.29 | 0.525 | 13.9 | -- | -- | -1.84 | -- | -- | 0.229 | -- | 22.66 | 11 | -- | -- |
| 214.13 | 0.683 | 13.9 | -- | -- | -- | -- | -- | -0.00321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 49 | 71.48 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 104 | 72.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 128 | 72.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 168 | 72.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 235 | 72.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 240 | 72.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 272 | 72.84 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 292 | 73.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 317 | 73.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 322 | 73.25 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 326 | 73.28 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 328 | 73.29 | humidity | 90 | 43200 | < th | dose independent | sin | 12 | NA |
| 348 | 73.43 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 6 |
| 368 | 73.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 391 | 73.68 | humidity | 90 | 43200 | > th | dose independent | sin | 12 | NA |
| 411 | 73.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 417 | 73.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 418 | 73.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 516 | 74.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 563 | 74.46 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 566 | 74.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 591 | 74.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 614 | 74.65 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 697 | 74.94 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 698 | 74.94 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 699 | 74.95 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 739 | 75.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 743 | 75.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 768 | 75.14 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 837 | 75.35 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 846 | 75.35 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 849 | 75.35 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 859 | 75.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 862 | 75.39 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 881 | 75.45 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 883 | 75.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 887 | 75.46 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 906 | 75.49 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 925 | 75.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 939 | 75.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 981 | 75.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |