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Os08g0359600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 30S ribosomal protein S17.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0189) R2 : 0.733
β1 : 0.828 (0.0691) R2dD : 0.0874 R2D : 0.0746
β2 : 1.65 (0.0493) R2dC : 0.66 R2C : 0.648
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0518 (0.0403) R2dN8 : 0.0013 R2N8 : -0.00643
σ : 0.355
deviance : 57.36
__
_____
C
peak time of C : 17.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.11 0.333 10.9 0.812 1.58 0.645 0.589 1.03 0.0161 18.5 8.569 114 -- --
51.72 0.335 10.9 0.826 1.56 0.553 0.494 -- 0.0231 18.4 7.397 156 -- --
50.85 0.332 10.9 0.802 1.57 0.653 -- 1.02 0.0246 18.5 8.601 127 -- --
52.36 0.337 10.9 0.822 1.54 0.592 -- -- 0.0202 18.6 4.635 160 -- --
94.36 0.452 10.9 0.713 -- 1.66 -- -0.0429 -0.137 -- -102.1 705 -- --
56.46 0.352 10.9 0.832 1.65 -- 0.605 -- 0.0494 17.8 -- -- -- --
57.36 0.355 10.9 0.828 1.65 -- -- -- 0.0518 17.8 -- -- -- --
94.27 0.452 10.9 0.696 -- 1.7 -- -- -0.148 -- -41.5 703 -- --
70.06 0.39 10.9 -- 1.51 0.587 -- -- -0.0743 18.6 3.502 179 -- --
198.45 0.658 10.8 0.777 -- -- -- -- 0.0131 -- -- -- -- --
75.44 0.406 10.9 -- 1.64 -- -- -- -0.0405 17.8 -- -- -- --
107.02 0.482 10.9 -- -- 1.72 -- -- -0.228 -- -21.02 705 -- --
214.39 0.683 10.9 -- -- -- -- -- -0.0732 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.39 precipitation 0.1 270 < th dose independent rect. 7 20
2 43.39 precipitation 0.1 270 < th dose dependent rect. 7 20
3 43.49 temperature 10.0 270 > th dose dependent rect. 7 7
4 43.52 wind 5.0 270 < th dose independent rect. 3 4
6 43.61 wind 7.0 270 < th dose dependent rect. 3 4
8 43.71 temperature 10.0 270 > th dose dependent rect. 3 4
9 43.87 precipitation 0.1 270 < th dose independent rect. 8 18
10 43.87 precipitation 0.1 270 < th dose dependent rect. 8 18
12 43.92 wind 7.0 270 < th dose independent rect. 7 20
18 44.01 temperature 30.0 270 < th dose dependent rect. 21 6
19 44.07 atmosphere 1010.0 270 < th dose independent rect. 13 9
23 44.14 precipitation 0.1 270 < th dose independent rect. 3 4
24 44.14 precipitation 0.1 270 < th dose dependent rect. 3 4
29 44.26 radiation 20.0 270 < th dose independent rect. 3 5
32 44.29 temperature 10.0 270 > th dose independent rect. 3 4
34 44.29 temperature 30.0 270 < th dose independent rect. 3 4
35 44.29 humidity 50.0 270 > th dose independent rect. 3 4
37 44.29 atmosphere 995.0 270 > th dose independent rect. 3 4
38 44.29 atmosphere 1015.0 270 < th dose independent rect. 3 4
39 44.29 radiation 40.0 270 < th dose independent rect. 3 4
41 44.29 temperature 10.0 270 > th dose independent rect. 7 20
44 44.31 wind 5.0 270 < th dose independent rect. 2 6
46 44.31 radiation 40.0 270 < th dose dependent rect. 3 5
62 44.55 precipitation 0.1 270 < th dose independent rect. 2 6
63 44.55 precipitation 0.1 270 < th dose dependent rect. 2 6
74 44.67 temperature 30.0 10 < th dose dependent rect. 23 6
81 44.72 temperature 10.0 270 > th dose independent rect. 2 6
83 44.72 temperature 30.0 270 < th dose independent rect. 2 6
84 44.72 humidity 50.0 270 > th dose independent rect. 2 6
86 44.72 atmosphere 995.0 270 > th dose independent rect. 2 6
87 44.72 atmosphere 1015.0 270 < th dose independent rect. 2 6
88 44.72 temperature 10.0 270 > th dose independent rect. 8 18
90 44.74 wind 3.0 270 < th dose independent rect. 4 2
91 44.74 radiation 40.0 270 < th dose independent rect. 2 6
107 44.79 atmosphere 1015.0 270 < th dose independent rect. 15 16
108 44.79 temperature 30.0 90 < th dose dependent rect. 23 5
114 44.83 humidity 50.0 270 > th dose dependent rect. 3 4
120 44.87 temperature 10.0 270 > th dose dependent rect. 2 6
139 45.02 temperature 10.0 270 > th dose dependent rect. 4 2
146 45.06 wind 7.0 270 < th dose independent rect. 7 8
155 45.14 temperature 30.0 270 < th dose dependent rect. 23 2
163 45.20 temperature 15.0 270 > th dose independent rect. 7 8
169 45.26 precipitation 0.1 270 < th dose independent rect. 19 8
172 45.26 precipitation 0.1 270 < th dose dependent rect. 19 8
181 45.29 temperature 15.0 10 > th dose dependent rect. 9 6
197 45.39 atmosphere 995.0 270 > th dose dependent rect. 20 7
212 45.44 radiation 40.0 270 < th dose dependent rect. 15 16
215 45.45 radiation 30.0 270 < th dose independent rect. 15 16
218 45.46 precipitation 0.1 270 < th dose independent rect. 7 8
219 45.46 precipitation 0.1 270 < th dose dependent rect. 7 8
265 45.59 wind 7.0 270 < th dose independent rect. 19 8
266 45.59 temperature 15.0 270 > th dose independent rect. 15 16
269 45.60 atmosphere 1015.0 270 < th dose independent rect. 7 8
288 45.67 humidity 70.0 90 > th dose independent rect. 4 7
311 45.70 radiation 40.0 90 < th dose independent rect. 4 19
319 45.74 temperature 10.0 270 > th dose independent rect. 19 8
320 45.74 temperature 30.0 270 < th dose independent rect. 19 8
321 45.74 humidity 50.0 270 > th dose independent rect. 19 8
322 45.74 atmosphere 995.0 270 > th dose independent rect. 19 8
323 45.74 radiation 1.0 270 < th dose independent rect. 19 8
328 45.74 temperature 10.0 270 > th dose independent rect. 3 16
329 45.74 atmosphere 1015.0 270 < th dose independent rect. 3 16
332 45.74 radiation 1.0 270 < th dose dependent rect. 19 8
341 45.76 atmosphere 995.0 270 > th dose independent rect. 7 8
343 45.76 radiation 40.0 270 < th dose independent rect. 11 21
346 45.78 wind 9.0 270 < th dose independent rect. 15 16
363 45.82 radiation 1.0 270 > th dose independent rect. 7 8
371 45.83 radiation 20.0 270 < th dose dependent rect. 3 16
378 45.86 temperature 20.0 30 > th dose independent rect. 15 18
383 45.87 atmosphere 995.0 90 > th dose dependent rect. 23 5
426 45.94 wind 7.0 270 < th dose independent rect. 22 15
439 45.98 temperature 15.0 270 > th dose independent rect. 13 9
440 45.98 atmosphere 995.0 270 > th dose independent rect. 15 16
443 45.99 radiation 40.0 10 < th dose independent rect. 5 18
444 45.99 humidity 50.0 270 > th dose dependent rect. 4 2
451 46.00 radiation 40.0 270 < th dose independent rect. 13 19
453 46.00 radiation 40.0 270 < th dose dependent rect. 3 16
509 46.09 atmosphere 995.0 270 > th dose independent rect. 7 20
553 46.23 radiation 40.0 90 < th dose dependent rect. 4 19
556 46.24 atmosphere 995.0 270 > th dose independent rect. 8 18
573 46.28 temperature 10.0 270 > th dose independent rect. 22 15
574 46.28 atmosphere 995.0 270 > th dose independent rect. 22 15
580 46.29 wind 9.0 270 < th dose independent rect. 3 16
581 46.29 precipitation 0.1 270 < th dose independent rect. 3 16
586 46.29 precipitation 0.1 270 < th dose dependent rect. 3 16
594 46.31 wind 1.0 270 > th dose independent rect. 8 18
624 46.36 radiation 40.0 10 < th dose dependent rect. 5 18
637 46.39 radiation 1.0 90 > th dose independent rect. 18 14
647 46.40 wind 1.0 270 > th dose independent rect. 7 8
663 46.43 atmosphere 995.0 270 > th dose independent rect. 3 16
680 46.45 humidity 50.0 270 > th dose independent rect. 7 8
690 46.46 humidity 50.0 270 > th dose independent rect. 15 16
724 46.51 precipitation 0.1 270 < th dose independent rect. 22 15
730 46.51 precipitation 0.1 270 < th dose dependent rect. 22 15
738 46.53 wind 9.0 270 < th dose dependent rect. 8 6
743 46.54 wind 9.0 270 < th dose dependent rect. 8 18
753 46.57 temperature 30.0 10 < th dose dependent rect. 20 9
776 46.61 humidity 90.0 90 < th dose independent rect. 9 6
790 46.63 radiation 1.0 90 > th dose independent rect. 5 3
811 46.65 radiation 10.0 270 < th dose independent rect. 3 16
820 46.66 wind 9.0 270 < th dose independent rect. 13 9
882 46.75 wind 9.0 270 < th dose dependent rect. 7 20
908 46.78 wind 7.0 10 < th dose dependent rect. 5 4
941 46.83 precipitation 0.1 270 < th dose independent rect. 15 16
945 46.83 atmosphere 1015.0 270 < th dose dependent rect. 3 4
946 46.83 precipitation 0.1 270 < th dose dependent rect. 15 16
958 46.86 radiation 40.0 270 < th dose independent rect. 12 10
964 46.87 radiation 1.0 10 > th dose independent rect. 5 4
996 46.89 radiation 1.0 90 < th dose dependent sin 11 NA