Os08g0359000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0359000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.05 | 0.24 | 15 | -0.658 | 0.683 | -0.552 | 0.902 | 0.318 | -0.429 | 7.85 | 88.64 | 314 | -- | -- |
| 26.21 | 0.238 | 15 | -0.641 | 0.687 | -0.553 | 0.996 | -- | -0.421 | 7.79 | 88.66 | 320 | -- | -- |
| 27.98 | 0.246 | 15 | -0.666 | 0.669 | -0.51 | -- | 0.702 | -0.422 | 8.06 | 88.04 | 336 | -- | -- |
| 28.92 | 0.25 | 15 | -0.623 | 0.686 | -0.481 | -- | -- | -0.42 | 7.87 | 86.22 | 319 | -- | -- |
| 44.39 | 0.31 | 15.1 | -0.65 | -- | -0.564 | -- | 0.0258 | -0.401 | -- | 74.98 | 1489 | -- | -- |
| 31.97 | 0.265 | 15 | -0.71 | 0.507 | -- | 0.757 | -- | -0.342 | 8.94 | -- | -- | -- | -- |
| 33.9 | 0.273 | 15 | -0.683 | 0.503 | -- | -- | -- | -0.341 | 9.13 | -- | -- | -- | -- |
| 44.38 | 0.31 | 15.1 | -0.67 | -- | -0.519 | -- | -- | -0.392 | -- | 73 | 1479 | -- | -- |
| 38.75 | 0.29 | 15 | -- | 0.728 | -0.578 | -- | -- | -0.362 | 7.77 | 85.9 | 324 | -- | -- |
| 48.49 | 0.325 | 15 | -0.684 | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
| 46.19 | 0.318 | 15 | -- | 0.502 | -- | -- | -- | -0.265 | 9.23 | -- | -- | -- | -- |
| 54.91 | 0.345 | 15.1 | -- | -- | -0.634 | -- | -- | -0.357 | -- | 81.74 | 1510 | -- | -- |
| 60.85 | 0.364 | 15 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.20 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 12 | 24.90 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 16 | 25.08 | humidity | 80.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 22 | 25.19 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 37 | 25.48 | humidity | 90.0 | 270 | < th | dose independent | sin | 6 | NA |
| 46 | 25.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 47 | 25.59 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 56 | 25.62 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 75 | 25.72 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 86 | 25.78 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 132 | 25.97 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 20 | 17 |
| 177 | 26.11 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 190 | 26.19 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 9 |
| 196 | 26.20 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 202 | 26.21 | humidity | 90.0 | 270 | > th | dose independent | sin | 5 | NA |
| 206 | 26.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 217 | 26.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 16 |
| 219 | 26.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 220 | 26.25 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 235 | 26.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 236 | 26.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 238 | 26.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 240 | 26.29 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 241 | 26.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 251 | 26.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 252 | 26.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 253 | 26.32 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 254 | 26.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 259 | 26.34 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 307 | 26.43 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 321 | 26.44 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 329 | 26.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 359 | 26.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 17 |
| 363 | 26.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 374 | 26.50 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 385 | 26.50 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 386 | 26.50 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 401 | 26.52 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 469 | 26.58 | humidity | 80.0 | 10 | < th | dose independent | rect. | 22 | 18 |
| 470 | 26.58 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 20 |
| 479 | 26.59 | humidity | 80.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 489 | 26.60 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 491 | 26.60 | humidity | 90.0 | 270 | > th | dose independent | rect. | 2 | 13 |
| 492 | 26.60 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 493 | 26.60 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 522 | 26.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 527 | 26.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 531 | 26.64 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 546 | 26.65 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 553 | 26.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 556 | 26.66 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 565 | 26.67 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 601 | 26.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 602 | 26.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 603 | 26.70 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 604 | 26.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 605 | 26.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 606 | 26.70 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 611 | 26.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 612 | 26.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 615 | 26.70 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 626 | 26.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 638 | 26.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 644 | 26.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 645 | 26.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 647 | 26.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 648 | 26.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 652 | 26.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 655 | 26.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 667 | 26.74 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 20 |
| 715 | 26.78 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 720 | 26.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 731 | 26.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 762 | 26.81 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 785 | 26.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 795 | 26.84 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 824 | 26.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 835 | 26.87 | humidity | 90.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 860 | 26.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 19 |
| 865 | 26.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 898 | 26.92 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 903 | 26.92 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 904 | 26.92 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 8 |
| 909 | 26.92 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 912 | 26.92 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 914 | 26.92 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 915 | 26.92 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 935 | 26.94 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 959 | 26.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 963 | 26.95 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 989 | 26.96 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 19 |