Os08g0357700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0357700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.9 | 0.692 | 2.89 | -0.0692 | 0.131 | -0.137 | -0.665 | 8.03 | 0.0201 | 4.65 | 49 | 237 | -- | -- |
| 218.24 | 0.688 | 2.88 | -0.119 | 0.112 | 2.92 | 0.0905 | -- | 0.0216 | 10 | 44.96 | 145 | -- | -- |
| 217.81 | 0.687 | 2.89 | -0.0805 | 0.154 | 0.106 | -- | 7.85 | 0.0271 | 6.06 | 48.9 | 236 | -- | -- |
| 216.35 | 0.685 | 2.92 | -0.182 | 0.0119 | 3.5 | -- | -- | 0.0169 | 10.3 | 44.6 | 145 | -- | -- |
| 218.9 | 0.689 | 2.88 | -0.0425 | -- | -0.299 | -- | 8.67 | 0.0292 | -- | 48.79 | 236 | -- | -- |
| 232.22 | 0.714 | 2.93 | -0.0787 | 0.0288 | -- | -1.21 | -- | 0.000126 | 4.15 | -- | -- | -- | -- |
| 236.15 | 0.72 | 2.92 | -0.0649 | 0.0644 | -- | -- | -- | 0.00679 | 8.55 | -- | -- | -- | -- |
| 216.21 | 0.685 | 2.92 | -0.192 | -- | 3.85 | -- | -- | 0.0183 | -- | 44.62 | 145 | -- | -- |
| 216.75 | 0.686 | 2.91 | -- | 0.0696 | 3.76 | -- | -- | 0.03 | 5.77 | 45 | 146 | -- | -- |
| 236.39 | 0.718 | 2.92 | -0.0647 | -- | -- | -- | -- | 0.00739 | -- | -- | -- | -- | -- |
| 236.27 | 0.719 | 2.92 | -- | 0.0642 | -- | -- | -- | 0.014 | 8.62 | -- | -- | -- | -- |
| 217.16 | 0.686 | 2.91 | -- | -- | 3.73 | -- | -- | 0.0389 | -- | 44.87 | 145 | -- | -- |
| 236.5 | 0.718 | 2.92 | -- | -- | -- | -- | -- | 0.0146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 206.62 | humidity | 50.0 | 90 | < th | dose independent | rect. | 14 | 3 |
| 2 | 206.64 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 14 | 3 |
| 153 | 206.86 | humidity | 50.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 154 | 206.86 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 157 | 206.86 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 163 | 206.89 | humidity | 50.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 213 | 207.41 | humidity | 50.0 | 90 | < th | dose independent | sin | 12 | NA |
| 216 | 207.90 | humidity | 50.0 | 90 | > th | dose independent | sin | 12 | NA |
| 223 | 209.62 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 226 | 210.17 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 227 | 210.17 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 228 | 210.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 229 | 210.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 257 | 211.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 258 | 211.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 284 | 211.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 304 | 212.27 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 327 | 213.96 | wind | 7.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 330 | 213.96 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 333 | 214.03 | temperature | 30.0 | 30 | > th | dose independent | rect. | 14 | 2 |
| 337 | 214.14 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 348 | 214.14 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 366 | 214.57 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 370 | 214.68 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 409 | 214.84 | temperature | 30.0 | 30 | > th | dose independent | rect. | 15 | 19 |
| 456 | 215.70 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 2 |
| 625 | 216.98 | temperature | 30.0 | 30 | < th | dose independent | sin | 15 | NA |
| 646 | 217.39 | temperature | 30.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 681 | 217.51 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 697 | 217.81 | humidity | 50.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 804 | 218.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 812 | 218.34 | temperature | 30.0 | 90 | > th | dose independent | sin | 15 | NA |
| 1000 | 218.87 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 4 |