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Os08g0356700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.46 (0.0472) R2 : 0.732
β1 : 0.868 (0.18) R2dD : 0.0151 R2D : 0.00536
β2 : 2.89 (0.121) R2dC : 0.392 R2C : 0.0468
β3 : -5.06 (0.222) R2dE : 0.432 R2E : 0.234
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.16 (0.106) R2dN8 : 0.109 R2N8 : 0.169
σ : 0.871
deviance : 349.36
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C
peak time of C : 13.2
E
wheather : radiation
threshold : 1.08
memory length : 11286
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.2
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.59 0.887 8.43 1.33 2.48 -4.22 0.649 -1.09 1.3 13.8 0.8799 11392 5.79 --
350.98 0.873 8.46 1.08 2.9 -4.9 0.265 -- 1.24 12.9 1.138 11275 4.89 --
352.51 0.874 8.44 1.37 2.78 -4.84 -- -0.676 1.19 13.1 1.2 11302 5.03 --
349.36 0.871 8.46 0.868 2.89 -5.06 -- -- 1.16 13.2 1.08 11286 4.2 --
390.14 0.92 8.55 0.462 -- -4.78 -- -0.157 0.879 -- 0.9019 13341 5.09 --
713.25 1.25 8.3 2.15 1.98 -- 0.327 -- 2.04 14.7 -- -- -- --
713.62 1.25 8.29 2.16 1.98 -- -- -- 2.04 14.7 -- -- -- --
373.51 0.9 8.52 0.711 -- -5.43 -- -- 1.03 -- 1.08 13350 5.14 --
362.32 0.887 8.49 -- 2.64 -5.01 -- -- 1.12 13.3 0.84 12740 4.08 --
941.74 1.43 8.3 2.07 -- -- -- -- 1.99 -- -- -- -- --
836.31 1.35 8.35 -- 1.94 -- -- -- 1.8 14.7 -- -- -- --
380.22 0.908 8.57 -- -- -5.86 -- -- 0.824 -- 1.04 13325 4.28 --
1055.12 1.52 8.36 -- -- -- -- -- 1.76 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 344.15 radiation 1 43200 < th dose independent rect. 18 11
2 345.55 radiation 1 43200 < th dose independent rect. 18 3
4 345.57 radiation 1 43200 < th dose independent rect. 18 6
12 347.79 radiation 1 43200 < th dose dependent rect. 4 1
17 351.30 radiation 1 43200 < th dose dependent rect. 22 7
20 351.56 radiation 1 43200 < th dose dependent rect. 19 10
22 353.04 radiation 1 14400 > th dose independent rect. 18 1
45 365.87 humidity 80 43200 < th dose independent rect. 16 1
46 365.94 radiation 1 43200 < th dose dependent rect. 18 3
47 365.94 radiation 1 43200 < th dose dependent rect. 18 6
56 366.49 radiation 1 14400 < th dose dependent rect. 18 22
59 367.40 temperature 15 43200 > th dose independent rect. 11 1
60 367.40 humidity 80 43200 < th dose independent rect. 15 3
65 368.20 radiation 1 14400 < th dose dependent rect. 18 16
67 368.59 radiation 1 14400 < th dose dependent rect. 6 23
71 368.71 radiation 1 14400 < th dose dependent rect. 6 17
74 368.73 radiation 1 14400 < th dose dependent rect. 6 14
86 369.21 temperature 15 43200 < th dose independent rect. 10 2
90 369.36 atmosphere 1010 43200 < th dose independent rect. 10 1
97 369.70 radiation 1 14400 < th dose dependent sin 11 NA
98 369.73 radiation 1 14400 < th dose dependent rect. 13 23
103 369.84 radiation 1 14400 < th dose dependent rect. 13 21
109 369.96 radiation 1 14400 < th dose dependent rect. 4 19
112 369.97 radiation 1 14400 < th dose dependent rect. 4 16
149 370.07 radiation 1 14400 < th dose dependent no NA NA
151 370.07 radiation 1 14400 < th dose dependent rect. 22 22
155 370.08 atmosphere 1010 43200 < th dose independent rect. 23 1
169 370.12 radiation 1 14400 < th dose dependent rect. 11 23
179 370.37 humidity 80 43200 > th dose independent rect. 16 2
185 370.48 radiation 1 14400 < th dose dependent sin 2 NA
187 370.55 radiation 1 14400 < th dose dependent rect. 9 23
188 370.56 radiation 1 14400 < th dose dependent rect. 4 11
198 370.72 atmosphere 1010 43200 > th dose independent rect. 17 1
208 370.80 radiation 1 14400 < th dose dependent rect. 22 17
223 371.09 atmosphere 1010 43200 > th dose independent rect. 22 4
227 371.10 atmosphere 1010 43200 > th dose independent rect. 11 1
236 371.20 radiation 1 14400 < th dose dependent rect. 5 3
245 371.29 atmosphere 1010 43200 > th dose independent rect. 9 3
247 371.30 atmosphere 1005 43200 > th dose dependent rect. 10 1
271 371.50 radiation 1 14400 < th dose dependent rect. 22 10
283 371.66 atmosphere 1010 43200 < th dose independent rect. 17 1
302 372.04 radiation 1 14400 > th dose independent rect. 18 21
309 372.13 humidity 90 43200 < th dose independent rect. 19 1
344 372.47 humidity 80 43200 > th dose dependent rect. 18 1
349 372.50 atmosphere 1010 43200 < th dose independent rect. 22 9
397 372.81 atmosphere 1010 43200 < th dose independent rect. 15 12
399 372.83 atmosphere 1010 43200 > th dose independent rect. 22 14
403 372.85 atmosphere 1010 43200 > th dose independent rect. 22 9
405 372.86 atmosphere 1010 43200 > th dose independent rect. 16 11
407 372.87 wind 3 43200 < th dose dependent rect. 21 1
418 372.92 atmosphere 1010 43200 < th dose independent rect. 22 14
428 373.01 atmosphere 1010 43200 < th dose independent rect. 15 16
434 373.03 atmosphere 1010 43200 > th dose independent rect. 16 20
438 373.04 atmosphere 1010 43200 < th dose independent rect. 15 21
459 373.16 atmosphere 1005 43200 < th dose independent rect. 12 5
476 373.21 atmosphere 1010 43200 > th dose independent rect. 16 15
477 373.21 atmosphere 1010 43200 < th dose independent rect. 9 18
499 373.28 atmosphere 1010 43200 < th dose independent sin 12 NA
506 373.29 atmosphere 1010 43200 < th dose independent rect. 22 21
520 373.31 atmosphere 1010 43200 > th dose independent rect. 22 22
521 373.31 atmosphere 1010 43200 < th dose independent rect. 9 22
526 373.33 atmosphere 1010 43200 > th dose independent sin 12 NA
541 373.35 atmosphere 1010 43200 > th dose independent rect. 9 18
584 373.43 atmosphere 1010 43200 > th dose independent rect. 19 17
590 373.44 atmosphere 1010 43200 > th dose independent rect. 6 21
632 373.52 atmosphere 1010 43200 > th dose independent rect. 9 22
648 373.54 atmosphere 1010 43200 < th dose independent rect. 5 22
691 373.62 atmosphere 1005 43200 < th dose independent rect. 13 1
720 373.66 atmosphere 1010 43200 > th dose independent rect. 19 12
769 373.73 atmosphere 1010 43200 > th dose independent no NA NA
773 373.74 atmosphere 1010 43200 < th dose independent no NA NA
783 373.74 atmosphere 1010 43200 > th dose independent rect. 19 23
840 373.82 radiation 1 14400 < th dose independent rect. 18 21
980 374.07 atmosphere 1005 43200 > th dose independent rect. 12 5
990 374.08 atmosphere 1010 43200 < th dose independent rect. 9 11