Os08g0356500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF247, plant family protein.
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Os08g0356500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF247, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.96 | 0.42 | 11.3 | 0.539 | 1.09 | 1.93 | 0.173 | 0.262 | 0.461 | 19.7 | 21.14 | 5229 | -- | -- |
| 80.06 | 0.417 | 11.3 | 0.486 | 1.09 | 1.9 | 0.137 | -- | 0.451 | 19.6 | 21.19 | 5228 | -- | -- |
| 80.05 | 0.417 | 11.3 | 0.54 | 1.09 | 1.93 | -- | 0.277 | 0.461 | 19.7 | 21.15 | 5228 | -- | -- |
| 80.14 | 0.417 | 11.3 | 0.481 | 1.09 | 1.89 | -- | -- | 0.451 | 19.7 | 21.2 | 5228 | -- | -- |
| 143.42 | 0.558 | 11.3 | 0.581 | -- | 2.04 | -- | 0.528 | 0.467 | -- | 21 | 5125 | -- | -- |
| 152.86 | 0.58 | 11.2 | 1.69 | 1.11 | -- | 0.299 | -- | 1.06 | 19.9 | -- | -- | -- | -- |
| 153.12 | 0.579 | 11.2 | 1.68 | 1.12 | -- | -- | -- | 1.06 | 19.9 | -- | -- | -- | -- |
| 143.36 | 0.558 | 11.3 | 0.417 | -- | 1.97 | -- | -- | 0.418 | -- | 21.08 | 5116 | -- | -- |
| 84.83 | 0.429 | 11.3 | -- | 1.12 | 2.14 | -- | -- | 0.408 | 19.7 | 19.54 | 13508 | -- | -- |
| 220.81 | 0.694 | 11.1 | 1.67 | -- | -- | -- | -- | 1.04 | -- | -- | -- | -- | -- |
| 227.5 | 0.706 | 11.2 | -- | 1.1 | -- | -- | -- | 0.872 | 20 | -- | -- | -- | -- |
| 147.44 | 0.566 | 11.3 | -- | -- | 2.1 | -- | -- | 0.433 | -- | 21.1 | 5126 | -- | -- |
| 294.18 | 0.801 | 11.2 | -- | -- | -- | -- | -- | 0.86 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 67.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 7 | 67.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 12 | 67.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 13 | 67.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 23 | 68.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 24 | 68.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 31 | 70.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 34 | 71.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 40 | 71.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 42 | 71.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 49 | 73.62 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 78 | 74.06 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 127 | 75.14 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 165 | 75.69 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 168 | 75.70 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 169 | 75.71 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 173 | 75.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 182 | 75.81 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 208 | 75.87 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 216 | 75.90 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 238 | 75.96 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 7 | NA |
| 290 | 76.06 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 295 | 76.07 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 324 | 76.10 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 335 | 76.12 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 346 | 76.12 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 380 | 76.15 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 13 | NA |
| 385 | 76.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 391 | 76.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 414 | 76.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 420 | 76.18 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 5 | NA |
| 475 | 76.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 484 | 76.22 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 487 | 76.22 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 536 | 76.24 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 22 |
| 611 | 76.27 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 612 | 76.27 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 636 | 76.28 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 658 | 76.28 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 668 | 76.29 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 827 | 76.36 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 852 | 76.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 890 | 76.39 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 907 | 76.40 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 963 | 76.43 | atmosphere | 1010 | 43200 | < th | dose independent | no | NA | NA |
| 987 | 76.44 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 8 | 23 |