Os08g0355500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0355500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.67 | 0.219 | 10.4 | -0.989 | 0.828 | -0.0474 | 0.0561 | 1.69 | 0.0289 | 5.31 | 60.73 | 547 | -- | -- |
| 24.62 | 0.231 | 10.4 | -0.885 | 0.762 | 0.0911 | 0.739 | -- | 0.0537 | 5.43 | 56.49 | 237 | -- | -- |
| 21.68 | 0.217 | 10.4 | -0.991 | 0.821 | -0.0373 | -- | 1.73 | 0.0297 | 5.31 | 60.05 | 540 | -- | -- |
| 25.9 | 0.237 | 10.4 | -0.886 | 0.757 | 0.147 | -- | -- | 0.0495 | 5.26 | 52 | 376 | -- | -- |
| 36.16 | 0.28 | 10.4 | -0.939 | -- | 0.758 | -- | 1.2 | 0.0938 | -- | 61.38 | 381 | -- | -- |
| 24.73 | 0.233 | 10.4 | -0.885 | 0.827 | -- | 0.76 | -- | 0.0505 | 5.33 | -- | -- | -- | -- |
| 26.14 | 0.239 | 10.4 | -0.884 | 0.831 | -- | -- | -- | 0.0469 | 5.24 | -- | -- | -- | -- |
| 38.38 | 0.289 | 10.4 | -0.85 | -- | 0.944 | -- | -- | 0.0807 | -- | 38.38 | 359 | -- | -- |
| 46.27 | 0.317 | 10.4 | -- | 0.707 | 0.204 | -- | -- | 0.151 | 5.19 | 34.01 | 435 | -- | -- |
| 62.22 | 0.369 | 10.4 | -0.855 | -- | -- | -- | -- | 0.0678 | -- | -- | -- | -- | -- |
| 46.76 | 0.32 | 10.4 | -- | 0.816 | -- | -- | -- | 0.145 | 5.28 | -- | -- | -- | -- |
| 57.45 | 0.353 | 10.4 | -- | -- | 0.949 | -- | -- | 0.175 | -- | 33.46 | 356 | -- | -- |
| 81.52 | 0.421 | 10.4 | -- | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.38 | humidity | 60 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 6 | 21.49 | humidity | 80 | 720 | > th | dose dependent | sin | 0 | NA |
| 11 | 21.51 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 23 |
| 17 | 21.56 | humidity | 60 | 720 | > th | dose dependent | sin | 0 | NA |
| 26 | 21.62 | radiation | 40 | 720 | < th | dose independent | rect. | 20 | 23 |
| 34 | 21.66 | radiation | 40 | 720 | < th | dose independent | rect. | 18 | 23 |
| 42 | 21.69 | radiation | 40 | 720 | < th | dose independent | sin | 2 | NA |
| 43 | 21.69 | radiation | 40 | 720 | < th | dose independent | rect. | 3 | 15 |
| 53 | 21.71 | humidity | 60 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 54 | 21.72 | radiation | 40 | 720 | < th | dose independent | rect. | 6 | 9 |
| 58 | 21.73 | radiation | 40 | 720 | < th | dose independent | rect. | 5 | 11 |
| 59 | 21.73 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 13 |
| 68 | 21.74 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 23 |
| 74 | 21.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 86 | 21.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 113 | 21.85 | radiation | 40 | 720 | < th | dose independent | no | NA | NA |
| 118 | 21.85 | humidity | 60 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 119 | 21.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 137 | 21.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 148 | 21.90 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 162 | 21.92 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 14 |
| 164 | 21.92 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 20 |
| 174 | 21.92 | radiation | 40 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 198 | 21.95 | radiation | 30 | 720 | > th | dose dependent | sin | 2 | NA |
| 200 | 21.95 | radiation | 30 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 223 | 21.96 | humidity | 90 | 720 | < th | dose dependent | sin | 1 | NA |
| 226 | 21.96 | radiation | 30 | 720 | > th | dose dependent | no | NA | NA |
| 339 | 21.96 | humidity | 60 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 365 | 21.97 | radiation | 30 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 388 | 21.98 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 12 |
| 403 | 21.98 | humidity | 90 | 720 | < th | dose dependent | rect. | 6 | 11 |
| 430 | 21.99 | humidity | 80 | 720 | > th | dose independent | sin | 0 | NA |
| 600 | 22.00 | radiation | 40 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 629 | 22.01 | radiation | 40 | 720 | > th | dose independent | sin | 9 | NA |
| 633 | 22.01 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 18 |
| 666 | 22.02 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 3 |
| 668 | 22.02 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 4 |
| 677 | 22.02 | humidity | 90 | 720 | < th | dose independent | rect. | 6 | 11 |
| 682 | 22.02 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 15 |
| 710 | 22.03 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 18 |
| 714 | 22.03 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 22 |
| 775 | 22.04 | radiation | 40 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 790 | 22.05 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 2 |
| 792 | 22.05 | humidity | 70 | 720 | < th | dose independent | rect. | 9 | 8 |
| 794 | 22.05 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 817 | 22.06 | radiation | 40 | 270 | < th | dose independent | sin | 23 | NA |
| 818 | 22.06 | humidity | 90 | 720 | < th | dose independent | rect. | 7 | 9 |
| 842 | 22.07 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 847 | 22.07 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 14 |
| 929 | 22.08 | radiation | 40 | 720 | > th | dose dependent | rect. | 9 | 2 |