Os08g0353700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0353700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.04	(0.101)	R²	:	0.401
β₁	:	9.8	(0.933)	R²_dD	:	16	R²_D	:	-18.3
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-32.5	(3.31)	R²_dE	:	74.9	R²_E	:	-85.9
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	328	(31.6)	R²_dD*E	:	95.9	R²_D*E	:	-84.9
γ₁	:	0.0929	(0.053)	R²_dN8	:	0.00563	R²_N8	:	-2.9
σ	:	0.462
deviance	:	98.55
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	30.25
memory length	:	1507
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	8.02
open length of G	:	0.867

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
95.86	0.46	1.98	10.2	0.308	-30.3	0.0137	306	0.102	3.74	30.18	1463	8.02	0.803
333.3	0.85	3.12	-0.32	0.211	-10.3	-4.81	--	0.0597	18.7	30.27	149	8.97	0.0166
93.02	0.449	2.1	9.15	0.36	-31	--	313	0.0844	3.96	30.26	1485	8.07	0.768
153.03	0.58	3.07	0.217	0.428	-0.254	--	--	0.0178	4.04	31.3	22	4.85	6.78
98.55	0.462	2.04	9.8	--	-32.5	--	328	0.0929	--	30.25	1507	8.02	0.867
152.92	0.58	3.07	0.219	0.426	--	0.247	--	0.0198	4.02	--	--	--	--
153.09	0.579	3.07	0.216	0.428	--	--	--	0.0184	4.02	--	--	--	--
162.23	0.593	3.07	0.238	--	-0.342	--	--	0.0289	--	28.2	10	4.75	7.67
154.17	0.578	3.08	--	0.429	-0.195	--	--	-0.00629	4.03	29.6	33	4.78	6.8
163.06	0.597	3.07	0.233	--	--	--	--	0.0298	--	--	--	--	--
154.32	0.581	3.08	--	0.432	--	--	--	-0.00564	4.01	--	--	--	--
163.19	0.595	3.08	--	--	-0.404	--	--	0.0159	--	28.2	9	5.9	8.03
164.5	0.599	3.08	--	--	--	--	--	0.00392	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	118.05	temperature	30	1440	> th	dose dependent	rect.	8	1
29	123.76	temperature	30	1440	> th	dose independent	rect.	8	1
57	126.50	wind	1	270	< th	dose dependent	rect.	2	1
58	126.67	temperature	30	4320	< th	dose independent	rect.	2	7
59	126.72	temperature	30	4320	< th	dose independent	rect.	4	5
63	126.95	temperature	30	4320	< th	dose independent	rect.	19	14
66	127.04	temperature	30	4320	< th	dose independent	rect.	8	1
86	131.25	wind	1	30	< th	dose independent	rect.	3	1
88	131.76	wind	1	270	< th	dose independent	rect.	2	1
137	135.33	wind	1	1440	< th	dose dependent	rect.	7	1
216	137.71	temperature	30	4320	> th	dose dependent	sin	8	NA
232	137.87	radiation	10	4320	> th	dose independent	rect.	16	15
237	137.91	temperature	30	4320	> th	dose independent	sin	9	NA
239	138.00	radiation	10	4320	> th	dose independent	rect.	17	1
274	138.31	temperature	30	4320	< th	dose independent	sin	9	NA
300	138.72	radiation	10	4320	> th	dose dependent	rect.	16	15
319	138.94	wind	1	1440	< th	dose independent	rect.	7	1
344	139.29	radiation	10	4320	< th	dose independent	rect.	16	15
416	139.75	wind	1	90	< th	dose dependent	rect.	17	11
433	139.94	radiation	1	4320	> th	dose dependent	rect.	17	1
468	140.09	wind	1	1440	> th	dose independent	rect.	7	1
517	140.35	radiation	40	4320	< th	dose dependent	rect.	17	7
520	140.36	radiation	40	4320	< th	dose dependent	rect.	17	9
560	140.44	radiation	20	4320	< th	dose dependent	rect.	17	1
595	140.51	radiation	40	4320	> th	dose dependent	rect.	12	1
598	140.52	radiation	20	4320	< th	dose dependent	rect.	16	14
636	140.59	radiation	40	4320	< th	dose dependent	rect.	17	13
637	140.60	radiation	10	4320	< th	dose independent	rect.	16	2
646	140.62	radiation	40	1440	< th	dose independent	rect.	4	5
666	140.66	temperature	30	4320	> th	dose independent	no	NA	NA
667	140.66	temperature	30	4320	> th	dose independent	rect.	8	11
779	140.70	radiation	10	4320	< th	dose independent	rect.	16	10
806	140.71	radiation	10	4320	< th	dose independent	rect.	16	6
813	140.72	radiation	10	4320	< th	dose independent	rect.	16	4
843	140.75	radiation	40	1440	> th	dose independent	rect.	8	1
891	140.79	radiation	40	1440	< th	dose independent	rect.	18	15
918	140.82	temperature	30	4320	< th	dose independent	rect.	5	21
919	140.82	temperature	30	4320	> th	dose dependent	no	NA	NA