Os08g0352400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0352400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.71 | 0.406 | 9.65 | -1.57 | 1.34 | 0.921 | -0.102 | -1.22 | -0.596 | 8.25 | 26.1 | 1456 | -- | -- |
| 75.93 | 0.406 | 9.61 | -1.23 | 1.35 | 0.831 | -0.0461 | -- | -0.502 | 8.22 | 26.3 | 1464 | -- | -- |
| 74.74 | 0.403 | 9.65 | -1.57 | 1.34 | 0.92 | -- | -1.21 | -0.595 | 8.24 | 26.11 | 1455 | -- | -- |
| 75.87 | 0.406 | 9.6 | -1.21 | 1.34 | 0.824 | -- | -- | -0.476 | 8.24 | 26.3 | 1465 | -- | -- |
| 173.97 | 0.614 | 9.68 | -1.5 | -- | 0.889 | -- | -1.05 | -0.559 | -- | 26 | 1415 | -- | -- |
| 98.15 | 0.464 | 9.54 | -0.898 | 1.33 | -- | -0.0387 | -- | -0.209 | 8.09 | -- | -- | -- | -- |
| 98.15 | 0.464 | 9.54 | -0.899 | 1.33 | -- | -- | -- | -0.209 | 8.09 | -- | -- | -- | -- |
| 174.13 | 0.615 | 9.64 | -1.18 | -- | 0.852 | -- | -- | -0.528 | -- | 25.32 | 1408 | -- | -- |
| 111.15 | 0.491 | 9.56 | -- | 1.39 | 0.566 | -- | -- | -0.287 | 7.98 | 26.2 | 1626 | -- | -- |
| 195.89 | 0.654 | 9.58 | -0.888 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 119.47 | 0.511 | 9.52 | -- | 1.33 | -- | -- | -- | -0.108 | 8.14 | -- | -- | -- | -- |
| 206.79 | 0.67 | 9.58 | -- | -- | 0.484 | -- | -- | -0.192 | -- | 27.1 | 1405 | -- | -- |
| 216.68 | 0.687 | 9.56 | -- | -- | -- | -- | -- | -0.0938 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 2 | 74.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 3 | 74.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 5 | 74.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 7 | 74.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 16 | 74.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 17 | 74.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 18 | 74.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 27 | 74.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 36 | 74.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 44 | 74.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 118 | 75.18 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 133 | 75.27 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 136 | 75.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 234 | 75.74 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 334 | 75.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 357 | 76.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 372 | 76.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 400 | 76.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 460 | 76.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 537 | 76.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 568 | 76.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 615 | 76.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 617 | 76.38 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 750 | 76.68 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 838 | 76.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 844 | 76.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 865 | 76.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 962 | 76.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |