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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0352100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0672) R2 : 0.286
β1 : 2.25 (0.282) R2dD : 0.202 R2D : 0.0364
β2 : 1.01 (0.136) R2dC : 0.0884 R2C : 0.0445
β3 : -1.58 (0.404) R2dE : 0.0868 R2E : 0.0376
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.39 (1.19) R2dD*E : 0.146 R2D*E : -0.308
γ1 : 0.619 (0.138) R2dN8 : 0.062 R2N8 : 0.0018
σ : 1.01
deviance : 473.61
__
_____
C
peak time of C : 3.51
E
wheather : temperature
threshold : 23.54
memory length : 6073
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
473.01 1.02 3.87 2.24 1.02 -1.57 0.584 -5.3 0.621 3.57 24.04 6092 -- --
491.62 1.03 4.04 1.56 1.01 -0.601 0.551 -- 0.487 3.65 36.45 3480 -- --
473.61 1.01 3.87 2.25 1.01 -1.58 -- -5.39 0.619 3.51 23.54 6073 -- --
492.2 1.03 4.04 1.57 0.991 -0.573 -- -- 0.483 3.63 41.49 2538 -- --
531.48 1.07 3.84 2.27 -- -1.92 -- -6.2 0.647 -- 23.38 6380 -- --
497.63 1.05 4.01 1.81 1.04 -- 0.575 -- 0.604 3.52 -- -- -- --
498.65 1.05 4.02 1.8 1.04 -- -- -- 0.601 3.48 -- -- -- --
542.74 1.09 3.98 2.04 -- 1.08 -- -- 0.772 -- 41.49 2538 -- --
526.47 1.07 4.14 -- 1.01 -1.43 -- -- -0.000324 3.95 28.3 15469 -- --
559.48 1.11 4.02 1.84 -- -- -- -- 0.629 -- -- -- -- --
583.62 1.13 4.06 -- 1.08 -- -- -- 0.401 3.47 -- -- -- --
553.02 1.1 4.17 -- -- -1.57 -- -- -0.0463 -- 36.67 47520 -- --
648.73 1.19 4.06 -- -- -- -- -- 0.425 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.39 temperature 20 720 > th dose dependent rect. 20 5
19 463.35 temperature 25 720 < th dose dependent rect. 21 3
22 463.76 temperature 25 720 < th dose dependent rect. 20 5
24 463.82 temperature 30 4320 > th dose dependent rect. 18 15
33 464.48 humidity 60 43200 < th dose independent rect. 10 1
45 465.58 temperature 20 720 > th dose dependent rect. 23 1
54 466.14 wind 3 720 < th dose dependent rect. 16 1
55 466.15 wind 5 14400 > th dose independent rect. 24 3
65 466.70 wind 5 14400 < th dose independent rect. 24 3
66 466.91 wind 3 720 < th dose independent rect. 16 1
69 467.37 temperature 30 4320 > th dose dependent rect. 18 1
83 467.39 humidity 50 43200 < th dose independent rect. 15 1
84 467.49 humidity 60 43200 > th dose independent rect. 8 3
98 467.95 wind 5 43200 > th dose dependent rect. 24 1
102 468.11 wind 5 43200 < th dose independent rect. 24 1
108 468.31 wind 5 43200 > th dose independent rect. 24 1
112 468.40 humidity 50 43200 > th dose independent rect. 14 2
127 468.93 wind 3 720 < th dose independent rect. 15 4
134 469.18 wind 1 1440 > th dose independent rect. 16 1
141 469.38 wind 5 14400 > th dose dependent rect. 24 3
159 469.68 wind 5 4320 < th dose independent rect. 20 7
164 469.80 wind 5 4320 > th dose independent rect. 20 8
168 469.84 temperature 25 270 < th dose dependent rect. 20 11
173 469.88 wind 3 720 < th dose dependent rect. 15 6
182 470.04 humidity 60 43200 < th dose dependent rect. 11 1
186 470.14 humidity 80 30 < th dose independent rect. 24 7
201 470.48 temperature 25 720 < th dose independent rect. 19 5
204 470.55 humidity 50 43200 < th dose independent rect. 13 4
218 470.74 wind 1 720 < th dose dependent rect. 13 9
235 470.95 wind 3 720 < th dose independent rect. 18 1
253 471.12 humidity 50 43200 < th dose dependent rect. 14 2
261 471.18 radiation 1 14400 < th dose independent rect. 12 5
266 471.23 radiation 1 14400 > th dose independent rect. 12 5
282 471.33 wind 1 4320 < th dose independent rect. 21 1
309 471.46 wind 3 720 < th dose dependent rect. 18 1
337 471.57 temperature 30 4320 > th dose independent rect. 18 15
347 471.64 atmosphere 1015 43200 > th dose dependent rect. 23 2
364 471.68 atmosphere 1015 43200 > th dose dependent rect. 22 5
376 471.72 atmosphere 1015 43200 > th dose dependent rect. 21 8
405 471.82 humidity 50 43200 > th dose independent sin 21 NA
451 471.96 humidity 50 43200 < th dose independent sin 20 NA
493 472.08 wind 3 720 < th dose dependent rect. 6 15
501 472.10 humidity 80 30 < th dose dependent rect. 1 6
530 472.18 atmosphere 1015 43200 > th dose dependent sin 11 NA
548 472.24 atmosphere 1015 43200 > th dose independent rect. 14 11
561 472.26 wind 5 4320 > th dose dependent rect. 21 6
566 472.27 humidity 50 43200 > th dose independent rect. 2 15
618 472.37 temperature 20 10 > th dose dependent rect. 23 8
657 472.44 atmosphere 1015 43200 > th dose independent rect. 23 1
658 472.44 atmosphere 1015 43200 < th dose independent rect. 23 1
713 472.52 wind 1 4320 < th dose dependent rect. 15 7
733 472.55 atmosphere 1015 43200 > th dose independent sin 16 NA
752 472.58 atmosphere 1015 43200 < th dose independent rect. 15 9
783 472.60 atmosphere 1015 43200 > th dose dependent rect. 2 1
825 472.64 humidity 50 43200 > th dose independent rect. 17 23
846 472.66 atmosphere 1015 43200 > th dose dependent rect. 10 22
873 472.69 wind 1 270 < th dose dependent rect. 19 4
893 472.70 wind 1 4320 < th dose dependent rect. 21 1
901 472.70 atmosphere 1015 43200 > th dose dependent rect. 7 23
918 472.71 atmosphere 1005 43200 > th dose dependent rect. 22 1
938 472.72 atmosphere 1015 43200 > th dose dependent no NA NA
977 472.75 atmosphere 1015 43200 > th dose dependent rect. 2 23
981 472.76 atmosphere 1015 43200 > th dose independent rect. 20 1