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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0351200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0521) R2 : 0.0593
β1 : -0.825 (0.191) R2dD : 0.04 R2D : 0.0164
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.438 (0.111) R2dN8 : 0.0428 R2N8 : 0.0193
σ : 0.979
deviance : 438.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
410.12 0.951 3.91 -0.456 0.424 0.0663 -0.212 -3.69 -0.382 4.31 70 1569 -- --
419.85 0.954 3.95 -0.965 0.385 0.654 -0.874 -- -0.539 3.5 93.95 351 -- --
410.21 0.943 3.91 -0.45 0.42 0.0783 -- -3.73 -0.379 4.21 69.91 1584 -- --
415.06 0.949 3.9 -0.862 0.321 1.56 -- -- -0.388 3.63 94.63 340 -- --
419.15 0.954 3.9 -0.415 -- 0.283 -- -3.97 -0.342 -- 68.57 1625 -- --
426.87 0.969 3.91 -0.849 0.455 -- -0.524 -- -0.453 4.19 -- -- -- --
427.63 0.968 3.91 -0.843 0.451 -- -- -- -0.45 4.08 -- -- -- --
419.82 0.954 3.89 -0.85 -- 1.63 -- -- -0.339 -- 94.32 334 -- --
433.09 0.969 3.87 -- 0.305 1.67 -- -- -0.273 2.87 94.76 346 -- --
438.68 0.979 3.91 -0.825 -- -- -- -- -0.438 -- -- -- -- --
446.38 0.988 3.89 -- 0.434 -- -- -- -0.356 4.11 -- -- -- --
438.55 0.975 3.87 -- -- 1.71 -- -- -0.253 -- 94.56 340 -- --
456.64 0.997 3.89 -- -- -- -- -- -0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 402.36 wind 1 43200 < th dose independent rect. 16 19
2 402.45 wind 1 43200 < th dose independent rect. 18 18
6 403.12 wind 1 43200 < th dose independent rect. 20 16
11 403.66 wind 1 43200 < th dose dependent rect. 3 21
13 403.69 wind 1 43200 < th dose dependent rect. 5 7
16 403.81 wind 1 43200 > th dose independent rect. 16 18
28 404.20 wind 1 43200 > th dose independent rect. 3 9
29 404.22 wind 1 43200 > th dose independent rect. 18 17
31 404.37 wind 1 43200 < th dose independent rect. 8 1
35 404.46 radiation 40 1440 > th dose dependent rect. 13 1
37 404.48 wind 1 43200 < th dose independent rect. 3 9
44 404.62 wind 1 43200 > th dose independent rect. 5 6
46 404.64 wind 1 43200 < th dose dependent rect. 23 20
57 404.84 wind 1 43200 > th dose independent rect. 20 15
61 404.92 wind 1 43200 > th dose independent rect. 22 13
64 404.95 wind 1 43200 < th dose dependent rect. 23 22
67 405.13 wind 3 1440 < th dose independent rect. 8 1
72 405.17 wind 1 43200 > th dose independent sin 6 NA
74 405.19 wind 1 43200 < th dose dependent sin 3 NA
82 405.31 wind 1 43200 < th dose independent sin 5 NA
102 405.54 wind 1 43200 < th dose independent rect. 12 19
104 405.60 wind 3 1440 > th dose independent rect. 8 1
115 405.78 wind 9 14400 < th dose independent rect. 23 1
135 406.05 wind 1 43200 < th dose dependent rect. 12 22
141 406.14 radiation 40 1440 > th dose dependent rect. 13 3
160 406.19 humidity 80 30 < th dose independent rect. 12 22
171 406.29 wind 1 43200 < th dose dependent rect. 23 15
197 406.63 wind 1 43200 < th dose dependent rect. 20 23
201 406.68 humidity 80 14400 < th dose independent rect. 9 1
209 406.73 humidity 80 10 < th dose dependent sin 11 NA
221 406.83 wind 1 43200 < th dose dependent rect. 18 23
225 406.89 radiation 10 14400 > th dose dependent rect. 5 1
248 407.05 wind 7 90 < th dose independent rect. 12 11
255 407.15 radiation 40 1440 > th dose independent rect. 13 3
288 407.36 humidity 90 14400 > th dose dependent rect. 12 2
293 407.41 humidity 90 14400 > th dose dependent rect. 12 4
301 407.52 wind 1 43200 < th dose dependent rect. 15 23
306 407.56 humidity 80 14400 > th dose independent rect. 19 1
313 407.62 wind 7 10 < th dose independent rect. 12 11
319 407.67 atmosphere 995 43200 < th dose independent rect. 11 16
339 407.70 wind 1 43200 < th dose dependent no NA NA
343 407.74 atmosphere 995 43200 < th dose independent rect. 12 14
346 407.76 atmosphere 1000 43200 > th dose independent rect. 18 1
348 407.76 wind 1 43200 < th dose dependent rect. 15 20
350 407.77 atmosphere 995 43200 < th dose independent rect. 10 18
352 407.80 atmosphere 995 43200 < th dose independent sin 17 NA
354 407.81 atmosphere 995 43200 > th dose independent rect. 9 20
356 407.82 atmosphere 995 43200 > th dose independent rect. 10 18
357 407.82 atmosphere 995 43200 < th dose independent rect. 9 20
359 407.83 humidity 80 14400 < th dose independent rect. 19 1
361 407.84 atmosphere 995 43200 > th dose independent rect. 11 16
365 407.85 atmosphere 995 43200 > th dose independent rect. 8 22
366 407.85 atmosphere 995 43200 < th dose independent rect. 11 23
371 407.87 atmosphere 995 43200 > th dose independent rect. 12 23
374 407.90 humidity 90 14400 > th dose dependent rect. 18 1
377 407.91 atmosphere 1000 43200 < th dose independent rect. 18 1
378 407.91 atmosphere 995 43200 < th dose independent rect. 8 22
382 407.92 atmosphere 995 43200 > th dose independent no NA NA
383 407.92 atmosphere 995 43200 > th dose independent rect. 21 23
384 407.92 wind 1 43200 < th dose dependent rect. 18 20
398 407.96 wind 7 90 < th dose independent rect. 11 23
407 407.99 humidity 60 90 > th dose independent rect. 10 17
412 408.01 wind 1 1440 > th dose dependent rect. 8 1
417 408.03 temperature 30 90 < th dose dependent rect. 9 3
424 408.06 radiation 40 14400 > th dose dependent rect. 8 1
430 408.09 atmosphere 995 43200 < th dose independent no NA NA
432 408.09 atmosphere 995 43200 < th dose independent rect. 21 22
436 408.10 humidity 80 14400 > th dose independent rect. 8 2
442 408.10 temperature 15 30 > th dose dependent rect. 5 18
444 408.11 wind 1 43200 < th dose dependent rect. 9 23
450 408.15 atmosphere 995 43200 > th dose independent sin 17 NA
453 408.16 wind 1 43200 < th dose independent rect. 20 23
455 408.17 temperature 30 90 < th dose independent rect. 10 17
460 408.19 wind 1 43200 < th dose independent rect. 22 23
462 408.19 atmosphere 995 43200 > th dose independent rect. 17 23
466 408.20 humidity 80 10 < th dose dependent rect. 16 18
468 408.21 temperature 30 90 < th dose dependent rect. 10 1
474 408.22 atmosphere 995 43200 > th dose independent rect. 3 23
479 408.23 wind 5 1440 < th dose dependent rect. 8 1
480 408.23 wind 1 43200 < th dose dependent rect. 20 18
500 408.29 humidity 80 90 < th dose dependent rect. 16 18
504 408.31 humidity 90 1440 > th dose dependent rect. 20 1
521 408.39 temperature 15 90 > th dose dependent rect. 4 15
529 408.40 atmosphere 995 43200 < th dose independent rect. 17 23
531 408.40 radiation 40 14400 > th dose dependent rect. 15 18
536 408.41 humidity 90 14400 > th dose dependent rect. 9 7
579 408.55 wind 1 43200 < th dose independent rect. 22 21
589 408.60 humidity 80 30 < th dose independent rect. 15 19
600 408.62 temperature 15 30 > th dose dependent rect. 3 20
603 408.65 atmosphere 995 43200 < th dose dependent rect. 14 10
605 408.67 humidity 70 90 > th dose dependent rect. 20 14
613 408.73 humidity 80 1440 > th dose independent rect. 1 15
631 408.79 wind 3 1440 > th dose independent rect. 7 3
641 408.82 atmosphere 995 43200 < th dose dependent rect. 13 12
646 408.83 humidity 90 1440 < th dose dependent rect. 6 1
653 408.84 wind 1 43200 < th dose independent rect. 1 23
654 408.84 atmosphere 995 43200 < th dose dependent rect. 12 15
661 408.88 atmosphere 995 43200 < th dose dependent rect. 13 20
671 408.91 humidity 90 14400 > th dose independent rect. 12 4
683 408.93 humidity 90 1440 > th dose dependent rect. 18 7
697 409.00 wind 7 4320 > th dose independent rect. 18 1
700 409.01 atmosphere 995 43200 > th dose independent rect. 5 3
710 409.02 atmosphere 995 43200 > th dose independent rect. 24 11
711 409.02 atmosphere 995 43200 < th dose independent rect. 24 11
722 409.05 atmosphere 995 43200 < th dose independent rect. 3 6
726 409.05 humidity 70 1440 > th dose dependent rect. 20 20
730 409.07 wind 1 43200 > th dose independent rect. 7 2
731 409.07 atmosphere 995 43200 < th dose independent rect. 1 9
734 409.07 atmosphere 995 43200 < th dose dependent rect. 24 9
738 409.09 radiation 40 14400 < th dose independent rect. 8 1
740 409.10 atmosphere 995 43200 > th dose independent rect. 2 8
743 409.10 temperature 30 30 < th dose independent rect. 6 23
750 409.12 atmosphere 995 43200 > th dose independent rect. 3 6
757 409.14 atmosphere 995 43200 < th dose independent sin 7 NA
765 409.17 wind 1 43200 < th dose independent no NA NA
769 409.18 wind 7 4320 < th dose independent rect. 18 1
779 409.20 radiation 40 1440 > th dose dependent sin 13 NA
783 409.21 temperature 25 14400 > th dose dependent rect. 5 1
785 409.22 atmosphere 995 43200 > th dose independent rect. 23 13
789 409.22 atmosphere 1000 43200 < th dose dependent rect. 7 19
799 409.25 wind 3 1440 < th dose independent rect. 7 7
814 409.28 atmosphere 995 43200 > th dose independent rect. 21 16
819 409.29 atmosphere 995 43200 < th dose independent rect. 21 16
825 409.30 humidity 70 10 < th dose independent sin 11 NA
826 409.30 atmosphere 995 43200 > th dose independent sin 6 NA
833 409.30 atmosphere 1000 43200 < th dose dependent rect. 24 19
835 409.32 atmosphere 1010 30 < th dose independent rect. 5 18
839 409.33 wind 3 43200 < th dose independent rect. 10 1
844 409.33 atmosphere 995 43200 < th dose dependent sin 16 NA
852 409.35 wind 3 43200 < th dose dependent rect. 5 2
869 409.38 radiation 40 1440 < th dose independent rect. 13 2
879 409.40 wind 3 1440 > th dose independent rect. 7 7
880 409.40 radiation 20 14400 < th dose independent rect. 16 15
881 409.40 atmosphere 995 43200 < th dose dependent rect. 4 4
903 409.43 atmosphere 995 43200 < th dose dependent sin 9 NA
924 409.47 humidity 80 1440 < th dose independent rect. 2 15
944 409.50 humidity 70 14400 > th dose independent rect. 11 1
959 409.52 radiation 40 1440 < th dose independent rect. 13 14
960 409.52 radiation 40 1440 < th dose independent rect. 13 16
961 409.52 radiation 40 1440 < th dose independent rect. 13 18
981 409.54 radiation 40 1440 < th dose independent rect. 13 10
987 409.54 radiation 40 270 < th dose dependent rect. 8 18