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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0349100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0424) R2 : 0.125
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.02 (0.533) R2dE : 0.107 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.229 (0.0893) R2dN8 : 0.0192 R2N8 : 0.0183
σ : 0.796
deviance : 292.09
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.69
memory length : 35
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.5
open length of G : 0.941

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.44 0.795 3.04 0.152 0.276 -0.168 0.649 34.5 -0.255 4.4 29.95 11 14 1.92
292.6 0.797 3.04 -0.0154 0.156 2.8 0.803 -- -0.227 6.02 30.59 35 14.6 0.802
287.42 0.79 3.04 0.139 0.276 -0.212 -- 34.3 -0.261 3.88 29.96 12 14 1.9
289.29 0.792 3.05 -0.0189 0.158 4.09 -- -- -0.227 3.95 30.66 35 14.6 0.817
291.6 0.795 3.05 0.161 -- -0.311 -- 33.8 -0.26 -- 29.99 12 14 1.89
325.94 0.846 3.08 -0.0329 0.15 -- 0.324 -- -0.286 4.45 -- -- -- --
326.15 0.846 3.08 -0.0358 0.153 -- -- -- -0.288 3.62 -- -- -- --
292.04 0.796 3.06 -0.071 -- 4.11 -- -- -0.252 -- 30.63 35 14.5 0.917
288.97 0.792 3.06 -- 0.182 4.18 -- -- -0.23 4 30.59 35 14.5 0.904
327.46 0.846 3.08 -0.0294 -- -- -- -- -0.284 -- -- -- -- --
326.19 0.845 3.08 -- 0.153 -- -- -- -0.284 3.62 -- -- -- --
292.09 0.796 3.07 -- -- 4.02 -- -- -0.229 -- 30.69 35 14.5 0.941
327.48 0.845 3.08 -- -- -- -- -- -0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 287.08 temperature 30 10 > th dose dependent rect. 14 2
7 290.85 temperature 30 10 > th dose independent rect. 14 2
13 294.25 radiation 20 10 > th dose independent rect. 16 1
44 294.60 atmosphere 1000 90 < th dose independent rect. 13 3
49 295.90 radiation 30 90 > th dose independent rect. 15 17
50 296.28 atmosphere 1000 10 < th dose independent rect. 14 2
52 296.88 atmosphere 1000 90 < th dose independent rect. 14 1
81 298.43 radiation 30 90 > th dose dependent rect. 15 17
82 298.47 atmosphere 1000 90 < th dose dependent rect. 13 3
99 299.46 radiation 30 90 > th dose dependent rect. 15 1
115 299.94 temperature 30 270 > th dose dependent rect. 12 1
137 300.54 atmosphere 1000 10 < th dose dependent rect. 14 2
138 300.70 temperature 30 10 > th dose dependent sin 13 NA
191 302.10 humidity 80 90 < th dose independent rect. 2 5
241 303.61 temperature 30 270 > th dose independent rect. 12 1
267 304.14 humidity 60 90 < th dose independent rect. 14 1
271 304.23 humidity 70 10 < th dose dependent rect. 15 1
274 304.37 temperature 30 90 > th dose dependent rect. 18 22
277 304.43 radiation 20 10 > th dose dependent rect. 16 1
330 304.66 humidity 80 90 < th dose dependent rect. 2 5
418 305.34 atmosphere 1005 30 > th dose dependent rect. 7 1
443 305.54 humidity 90 10 < th dose dependent rect. 3 1
447 305.62 humidity 80 90 < th dose independent rect. 2 2
448 305.63 humidity 80 90 < th dose dependent rect. 2 2
460 305.81 humidity 60 90 < th dose dependent rect. 14 1
463 305.88 temperature 30 270 > th dose dependent sin 3 NA
467 305.91 atmosphere 1000 270 < th dose dependent rect. 12 1
471 305.99 humidity 90 10 < th dose independent rect. 3 1
747 307.46 humidity 80 10 < th dose dependent rect. 3 5
779 307.74 temperature 30 270 > th dose dependent no NA NA
890 307.83 atmosphere 995 10 > th dose independent sin 6 NA
940 308.15 atmosphere 995 90 < th dose independent rect. 18 22