Os08g0345400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0345400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.45 | 0.362 | 11.4 | -0.0575 | 1.68 | -1.01 | -0.347 | -0.127 | -0.741 | 16.7 | 25.8 | 214 | 3.45 | 16.2 |
| 59.27 | 0.359 | 11.4 | -0.0844 | 1.67 | -1.03 | -0.376 | -- | -0.74 | 16.6 | 25.7 | 215 | 3.43 | 15.7 |
| 59.53 | 0.359 | 11.4 | -0.0641 | 1.66 | -1.02 | -- | -0.168 | -0.744 | 16.6 | 25.8 | 217 | 3.39 | 15.8 |
| 59.61 | 0.36 | 11.4 | -0.0821 | 1.65 | -1.04 | -- | -- | -0.744 | 16.6 | 25.7 | 218 | 3.38 | 15.7 |
| 142.47 | 0.556 | 11.3 | -0.333 | -- | -1.48 | -- | 0.384 | -0.752 | -- | 25.6 | 198 | 1.1 | 14.5 |
| 108.08 | 0.487 | 11.3 | 0.162 | 1.95 | -- | -0.314 | -- | -0.558 | 17.8 | -- | -- | -- | -- |
| 108.32 | 0.487 | 11.3 | 0.165 | 1.95 | -- | -- | -- | -0.559 | 17.8 | -- | -- | -- | -- |
| 133.02 | 0.537 | 11.4 | -0.115 | -- | -1.44 | -- | -- | -0.849 | -- | 25.62 | 226 | 0.567 | 13.8 |
| 59.78 | 0.36 | 11.3 | -- | 1.65 | -1.03 | -- | -- | -0.736 | 16.6 | 25.7 | 220 | 3.35 | 15.7 |
| 304.94 | 0.816 | 11.3 | 0.105 | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
| 109.03 | 0.488 | 11.3 | -- | 1.94 | -- | -- | -- | -0.578 | 17.8 | -- | -- | -- | -- |
| 99.1 | 0.464 | 11.3 | -- | -- | -1.9 | -- | -- | -0.587 | -- | 25.71 | 270 | 1.38 | 7.22 |
| 305.23 | 0.815 | 11.3 | -- | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 2 | 62.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 3 | 63.00 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 6 | 63.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 8 | 64.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 56 | 67.97 | temperature | 20 | 90 | > th | dose dependent | sin | 2 | NA |
| 78 | 68.91 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 115 | 69.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 117 | 69.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 118 | 69.96 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 119 | 69.98 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 159 | 70.73 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 191 | 71.28 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 17 |
| 247 | 71.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 265 | 72.14 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 291 | 72.55 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 311 | 72.74 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 323 | 72.93 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 328 | 73.01 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 342 | 73.11 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 382 | 73.41 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 591 | 75.02 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 597 | 75.08 | radiation | 10 | 270 | < th | dose independent | rect. | 16 | 15 |
| 612 | 75.18 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 653 | 75.40 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 674 | 75.53 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 15 |
| 689 | 75.61 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 17 |
| 692 | 75.62 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 18 |
| 707 | 75.69 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 18 |
| 732 | 75.77 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 745 | 75.81 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 839 | 76.25 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 20 |
| 842 | 76.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 873 | 76.40 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 10 |
| 877 | 76.43 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 10 |
| 908 | 76.56 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 954 | 76.76 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 20 |
| 990 | 76.89 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 23 |