Os08g0343600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nectarin 5 (Fragment).
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Os08g0343600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nectarin 5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.25 | 0.343 | 3.24 | 0.714 | 0.123 | -0.689 | 0.227 | -0.762 | -0.026 | 8.77 | 21.8 | 1577 | -- | -- |
| 53.93 | 0.342 | 3.21 | 0.948 | 0.0895 | -0.658 | 0.26 | -- | 0.0394 | 8.7 | 21.8 | 1992 | -- | -- |
| 52.9 | 0.339 | 3.24 | 0.765 | 0.0814 | -0.708 | -- | -0.695 | -0.00912 | 8.46 | 21.7 | 1975 | -- | -- |
| 54.01 | 0.342 | 3.21 | 0.975 | 0.078 | -0.679 | -- | -- | 0.0432 | 8.38 | 21.79 | 2075 | -- | -- |
| 53.28 | 0.34 | 3.24 | 0.778 | -- | -0.718 | -- | -0.692 | -0.00481 | -- | 21.7 | 2075 | -- | -- |
| 68.14 | 0.387 | 3.26 | 0.658 | 0.122 | -- | 0.217 | -- | -0.174 | 8.81 | -- | -- | -- | -- |
| 68.27 | 0.387 | 3.26 | 0.665 | 0.126 | -- | -- | -- | -0.175 | 8.15 | -- | -- | -- | -- |
| 54.37 | 0.343 | 3.21 | 0.982 | -- | -0.686 | -- | -- | 0.0443 | -- | 21.79 | 2077 | -- | -- |
| 74.39 | 0.402 | 3.25 | -- | 0.0619 | -0.378 | -- | -- | -0.0811 | 8.48 | 22.6 | 2231 | -- | -- |
| 69.14 | 0.389 | 3.26 | 0.666 | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
| 79.91 | 0.418 | 3.28 | -- | 0.13 | -- | -- | -- | -0.249 | 7.78 | -- | -- | -- | -- |
| 74.63 | 0.402 | 3.25 | -- | -- | -0.381 | -- | -- | -0.127 | -- | 22.4 | 2014 | -- | -- |
| 80.82 | 0.42 | 3.28 | -- | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 4 | 53.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 35 | 53.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 52 | 53.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 57 | 53.95 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 71 | 54.01 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 101 | 54.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 106 | 54.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 155 | 54.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 356 | 54.81 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 477 | 54.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 489 | 54.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 513 | 55.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 543 | 55.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 819 | 55.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 879 | 55.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 946 | 55.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 996 | 55.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 4 |