Os08g0343000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0343000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.9 | 0.425 | 6.94 | 1.75 | 0.75 | 1.96 | -0.514 | 0.794 | 0.385 | 11.2 | 12.64 | 2509 | -- | -- |
| 82.5 | 0.423 | 6.97 | 1.55 | 0.739 | 1.95 | -0.571 | -- | 0.333 | 11.2 | 14.37 | 2539 | -- | -- |
| 82.98 | 0.424 | 6.94 | 1.74 | 0.746 | 1.97 | -- | 0.903 | 0.385 | 11.3 | 13.61 | 2513 | -- | -- |
| 83.1 | 0.425 | 6.97 | 1.55 | 0.757 | 1.79 | -- | -- | 0.326 | 11.3 | 17.74 | 2532 | -- | -- |
| 109.44 | 0.487 | 6.95 | 1.71 | -- | 1.88 | -- | 0.86 | 0.405 | -- | 4.609 | 3017 | -- | -- |
| 157.57 | 0.588 | 6.88 | 2.31 | 0.547 | -- | -0.731 | -- | 0.732 | 10.4 | -- | -- | -- | -- |
| 159.69 | 0.592 | 6.88 | 2.29 | 0.549 | -- | -- | -- | 0.731 | 10.7 | -- | -- | -- | -- |
| 108.24 | 0.485 | 6.98 | 1.62 | -- | 2.05 | -- | -- | 0.35 | -- | 10.06 | 1603 | -- | -- |
| 90.16 | 0.442 | 7.08 | -- | 0.606 | 2.35 | -- | -- | -0.178 | 10.8 | 12.12 | 26429 | -- | -- |
| 178.31 | 0.624 | 6.89 | 2.28 | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
| 297.39 | 0.807 | 6.94 | -- | 0.535 | -- | -- | -- | 0.476 | 10.4 | -- | -- | -- | -- |
| 112.48 | 0.494 | 7.1 | -- | -- | 2.33 | -- | -- | -0.2 | -- | 11.02 | 27521 | -- | -- |
| 314.86 | 0.828 | 6.95 | -- | -- | -- | -- | -- | 0.476 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 4 | 81.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 8 | 81.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 11 | 82.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 20 | 82.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 21 | 82.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 24 | 82.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 25 | 82.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 71 | 83.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 78 | 83.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 88 | 83.90 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 107 | 83.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 119 | 83.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 14 |
| 256 | 84.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 274 | 84.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 282 | 84.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 283 | 84.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 293 | 84.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 320 | 84.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 445 | 84.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 530 | 84.85 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 635 | 85.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 687 | 85.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 708 | 85.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 763 | 85.21 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 788 | 85.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 820 | 85.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 827 | 85.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 829 | 85.32 | temperature | 30 | 4320 | < th | dose dependent | sin | 8 | NA |
| 933 | 85.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 984 | 85.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |