Os08g0340900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0340900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.14 | 0.456 | 7.27 | 0.578 | 1.7 | -0.523 | 0.154 | 0.0248 | -0.538 | 18.5 | 1008 | 6712 | -- | -- |
| 93.84 | 0.451 | 7.28 | 0.544 | 1.67 | -0.508 | 0.141 | -- | -0.566 | 18.5 | 1008 | 6813 | -- | -- |
| 93.84 | 0.451 | 7.27 | 0.589 | 1.7 | -0.516 | -- | 0.0995 | -0.572 | 18.5 | 1008 | 6759 | -- | -- |
| 93.73 | 0.451 | 7.28 | 0.542 | 1.7 | -0.502 | -- | -- | -0.577 | 18.5 | 1008 | 6779 | -- | -- |
| 243.91 | 0.727 | 7.24 | 0.544 | -- | -0.629 | -- | -0.116 | -0.577 | -- | 1009 | 6769 | -- | -- |
| 103.34 | 0.477 | 7.26 | 0.417 | 1.72 | -- | 0.137 | -- | -0.504 | 18.5 | -- | -- | -- | -- |
| 103.39 | 0.476 | 7.26 | 0.415 | 1.72 | -- | -- | -- | -0.503 | 18.5 | -- | -- | -- | -- |
| 243.85 | 0.727 | 7.25 | 0.52 | -- | -0.574 | -- | -- | -0.616 | -- | 1008 | 6885 | -- | -- |
| 101.09 | 0.468 | 7.28 | -- | 1.71 | -0.455 | -- | -- | -0.591 | 18.5 | 1007 | 6905 | -- | -- |
| 256.61 | 0.749 | 7.23 | 0.372 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 107.92 | 0.486 | 7.27 | -- | 1.71 | -- | -- | -- | -0.55 | 18.5 | -- | -- | -- | -- |
| 250.59 | 0.737 | 7.25 | -- | -- | -0.531 | -- | -- | -0.623 | -- | 1007 | 8597 | -- | -- |
| 260.25 | 0.753 | 7.24 | -- | -- | -- | -- | -- | -0.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.56 | wind | 7.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 3 | 91.91 | wind | 7.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 5 | 92.24 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 7 | 92.34 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 8 | 92.40 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 22 | 92.55 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 27 | 92.78 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 29 | 92.89 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 36 | 93.14 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 37 | 93.16 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 39 | 93.18 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 42 | 93.25 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 44 | 93.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 50 | 93.35 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 52 | 93.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 54 | 93.37 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 65 | 93.38 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 66 | 93.40 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 8 |
| 73 | 93.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 74 | 93.50 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 78 | 93.54 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 79 | 93.54 | radiation | 40.0 | 30 | < th | dose independent | rect. | 4 | 19 |
| 82 | 93.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 88 | 93.62 | radiation | 30.0 | 90 | < th | dose independent | rect. | 15 | 19 |
| 89 | 93.62 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 93 | 93.67 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 99 | 93.71 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 111 | 93.82 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 113 | 93.83 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 125 | 93.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 141 | 93.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 146 | 93.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 149 | 93.98 | humidity | 70.0 | 10 | > th | dose independent | rect. | 4 | 7 |
| 167 | 94.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 168 | 94.08 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 171 | 94.08 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 185 | 94.14 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 186 | 94.14 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 194 | 94.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 198 | 94.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 200 | 94.18 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 206 | 94.20 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 207 | 94.20 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 211 | 94.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 212 | 94.21 | atmosphere | 1015.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 216 | 94.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 221 | 94.23 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 224 | 94.23 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 228 | 94.24 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 230 | 94.24 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 233 | 94.24 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 255 | 94.28 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 257 | 94.28 | atmosphere | 995.0 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 262 | 94.29 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 284 | 94.32 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 295 | 94.33 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 298 | 94.33 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 314 | 94.34 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 316 | 94.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 324 | 94.36 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 2 |
| 337 | 94.36 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 346 | 94.37 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 353 | 94.38 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 355 | 94.38 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 357 | 94.38 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 403 | 94.41 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 8 |
| 416 | 94.42 | wind | 7.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 420 | 94.42 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 19 |
| 428 | 94.43 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 443 | 94.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 464 | 94.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 466 | 94.45 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 468 | 94.45 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 496 | 94.47 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 498 | 94.47 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 515 | 94.48 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 516 | 94.48 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 520 | 94.48 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 546 | 94.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 559 | 94.51 | atmosphere | 995.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 569 | 94.52 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 614 | 94.54 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 664 | 94.56 | atmosphere | 1015.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 674 | 94.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 676 | 94.57 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 707 | 94.58 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 815 | 94.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 876 | 94.64 | humidity | 90.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 879 | 94.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 881 | 94.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 882 | 94.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 884 | 94.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 887 | 94.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 18 |