Os08g0339200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF516 family protein.
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Os08g0339200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF516 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.78 | 0.318 | 10.3 | 0.672 | 0.544 | 0.95 | -0.061 | 2.12 | 0.0894 | 19.9 | 30.8 | 339 | -- | -- |
| 49.66 | 0.328 | 10.3 | 1.03 | 0.502 | 1 | -0.409 | -- | 0.158 | 19.6 | 32.73 | 243 | -- | -- |
| 45.79 | 0.315 | 10.3 | 0.674 | 0.545 | 0.951 | -- | 2.13 | 0.0886 | 19.9 | 30.85 | 342 | -- | -- |
| 49.99 | 0.329 | 10.3 | 1.04 | 0.499 | 0.993 | -- | -- | 0.154 | 19.6 | 32.71 | 251 | -- | -- |
| 56.09 | 0.351 | 10.3 | 0.759 | -- | 0.752 | -- | 1.36 | 0.0807 | -- | 30.85 | 342 | -- | -- |
| 61.01 | 0.366 | 10.3 | 0.8 | 0.372 | -- | -0.339 | -- | 0.00989 | 21.8 | -- | -- | -- | -- |
| 61.44 | 0.367 | 10.3 | 0.812 | 0.372 | -- | -- | -- | 0.0102 | 22 | -- | -- | -- | -- |
| 57.74 | 0.354 | 10.3 | 0.983 | -- | 0.914 | -- | -- | 0.133 | -- | 74.81 | 2 | -- | -- |
| 75.45 | 0.405 | 10.3 | -- | 0.398 | 0.548 | -- | -- | -0.0172 | 20.6 | 100.2 | 176 | -- | -- |
| 69.77 | 0.39 | 10.3 | 0.817 | -- | -- | -- | -- | 0.0103 | -- | -- | -- | -- | -- |
| 78.83 | 0.415 | 10.4 | -- | 0.375 | -- | -- | -- | -0.0803 | 22.1 | -- | -- | -- | -- |
| 81.73 | 0.422 | 10.3 | -- | -- | 0.612 | -- | -- | -0.0117 | -- | 122.9 | 2 | -- | -- |
| 87.36 | 0.436 | 10.3 | -- | -- | -- | -- | -- | -0.0803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 4 | 44.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 26 | 46.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 28 | 46.06 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 31 | 46.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 34 | 46.11 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 37 | 46.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 48 | 46.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 54 | 46.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 69 | 46.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 84 | 46.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 86 | 46.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 92 | 46.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 98 | 46.68 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 102 | 46.71 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 185 | 47.15 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 307 | 47.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 309 | 47.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 658 | 47.80 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 767 | 47.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 787 | 47.91 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 896 | 48.00 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 21 |
| 908 | 48.01 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 22 |
| 910 | 48.01 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 916 | 48.02 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 21 |