Os08g0338600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine-rich extensin-like protein.
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Os08g0338600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine-rich extensin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.7 | 0.273 | 11.4 | -0.331 | 0.205 | 0.332 | 0.315 | -1.31 | -0.126 | 22.7 | 19.3 | 2063 | -- | -- |
| 36.02 | 0.28 | 11.4 | -0.196 | 0.205 | 0.692 | 0.225 | -- | -0.102 | 22.5 | 18.46 | 2667 | -- | -- |
| 34.02 | 0.272 | 11.4 | -0.333 | 0.207 | 0.361 | -- | -1.29 | -0.125 | 23.1 | 19.3 | 1991 | -- | -- |
| 36.1 | 0.28 | 11.4 | -0.189 | 0.194 | 0.75 | -- | -- | -0.0878 | 22.8 | 18.44 | 2063 | -- | -- |
| 36.59 | 0.282 | 11.4 | -0.339 | -- | 0.366 | -- | -1.24 | -0.127 | -- | 19.1 | 2105 | -- | -- |
| 42.95 | 0.307 | 11.3 | 0.113 | 0.22 | -- | 0.217 | -- | 0.0303 | 22.8 | -- | -- | -- | -- |
| 43.13 | 0.308 | 11.3 | 0.103 | 0.219 | -- | -- | -- | 0.0292 | 23.1 | -- | -- | -- | -- |
| 38.29 | 0.288 | 11.4 | -0.216 | -- | 0.729 | -- | -- | -0.0969 | -- | 18.44 | 2241 | -- | -- |
| 36.8 | 0.283 | 11.4 | -- | 0.199 | 0.68 | -- | -- | -0.0526 | 23 | 18.33 | 2007 | -- | -- |
| 46.12 | 0.317 | 11.3 | 0.108 | -- | -- | -- | -- | 0.031 | -- | -- | -- | -- | -- |
| 43.42 | 0.308 | 11.3 | -- | 0.22 | -- | -- | -- | 0.0177 | 23.1 | -- | -- | -- | -- |
| 39.15 | 0.291 | 11.4 | -- | -- | 0.682 | -- | -- | -0.0555 | -- | 18.31 | 2090 | -- | -- |
| 46.43 | 0.318 | 11.3 | -- | -- | -- | -- | -- | 0.0189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 33.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 4 | 33.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 5 | 33.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 6 | 33.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 10 | 33.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 11 | 33.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 13 | 33.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 15 | 33.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 17 | 33.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 19 | 33.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 23 | 33.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 36 | 33.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 37 | 33.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 41 | 33.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 13 |
| 57 | 33.96 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 59 | 33.96 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 69 | 33.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 84 | 33.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 101 | 34.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 119 | 34.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 128 | 34.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 129 | 34.09 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 173 | 34.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 282 | 34.33 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 285 | 34.34 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 304 | 34.35 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 306 | 34.36 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 310 | 34.37 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 315 | 34.37 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 326 | 34.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 335 | 34.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 368 | 34.44 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 373 | 34.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 504 | 34.65 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 661 | 34.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 675 | 34.86 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 684 | 34.88 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 692 | 34.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 700 | 34.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 701 | 34.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 725 | 34.92 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 733 | 34.92 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 745 | 34.94 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 764 | 34.97 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 6 |
| 820 | 35.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 841 | 35.07 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 17 | 8 |
| 845 | 35.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 869 | 35.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 894 | 35.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 954 | 35.20 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 964 | 35.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 970 | 35.22 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |