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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0335200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.21 (0.0443) R2 : 0.49
β1 : 3.28 (0.166) R2dD : 0.503 R2D : 0.215
β2 : 1.2 (0.124) R2dC : 0.145 R2C : -0.0835
β3 : 2.28 (0.216) R2dE : 0.208 R2E : -0.243
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.1 (0.103) R2dN8 : 0.216 R2N8 : -0.0774
σ : 0.804
deviance : 298.07
__
_____
C
peak time of C : 14.6
E
wheather : temperature
threshold : 27.76
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
290.53 0.801 4.25 2.87 1.24 2.38 0.356 2.42 1.01 14.6 27.6 52 -- --
297.17 0.803 4.2 3.29 1.21 2.28 -0.496 -- 1.11 14.6 27.7 51 -- --
290.85 0.794 4.24 2.93 1.23 2.37 -- 2.16 1.02 14.7 27.59 51 -- --
298.07 0.804 4.21 3.28 1.2 2.28 -- -- 1.1 14.6 27.76 51 -- --
319.3 0.832 4.25 3.09 -- 1.95 -- 0.595 0.939 -- 34.47 1151 -- --
368.92 0.9 4.32 2.73 0.525 -- -0.715 -- 0.613 14.8 -- -- -- --
370.67 0.902 4.32 2.71 0.524 -- -- -- 0.609 14.9 -- -- -- --
319.4 0.832 4.24 3.29 -- 1.99 -- -- 0.949 -- 38.44 1176 -- --
551.05 1.1 4.34 -- 0.749 0.928 -- -- 0.482 14.6 27.76 51 -- --
386.5 0.919 4.32 2.69 -- -- -- -- 0.595 -- -- -- -- --
564.74 1.11 4.39 -- 0.471 -- -- -- 0.307 14.9 -- -- -- --
569.53 1.11 4.37 -- -- 0.651 -- -- 0.388 -- 69.31 1074 -- --
577.55 1.12 4.39 -- -- -- -- -- 0.297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.62 temperature 30 30 < th dose dependent rect. 19 23
4 294.75 temperature 30 90 < th dose dependent rect. 11 22
5 294.77 temperature 30 30 < th dose dependent rect. 9 23
8 295.76 temperature 30 10 < th dose dependent rect. 11 23
9 295.76 temperature 30 10 < th dose dependent rect. 13 23
12 296.38 temperature 30 30 < th dose dependent no NA NA
14 296.49 temperature 30 30 < th dose dependent rect. 15 23
15 296.49 temperature 30 10 < th dose dependent rect. 21 23
19 296.93 temperature 30 30 < th dose dependent rect. 17 23
25 298.42 temperature 30 90 < th dose dependent sin 8 NA
26 298.42 temperature 30 10 < th dose dependent rect. 23 23
28 298.56 temperature 30 30 < th dose dependent rect. 3 23
42 299.89 temperature 10 90 > th dose dependent sin 8 NA
51 300.57 temperature 25 30 < th dose dependent rect. 5 23
54 300.78 temperature 30 30 < th dose dependent rect. 7 23
64 301.09 temperature 15 90 > th dose dependent rect. 16 23
69 301.39 temperature 15 10 > th dose dependent rect. 1 23
72 301.56 temperature 20 270 > th dose dependent rect. 16 19
79 301.75 temperature 15 270 > th dose dependent rect. 15 21
82 301.90 temperature 25 30 < th dose dependent rect. 1 23
139 303.48 temperature 20 10 > th dose dependent rect. 16 23
165 304.04 temperature 20 270 > th dose dependent rect. 17 17
199 304.76 temperature 10 10 > th dose dependent no NA NA
233 305.25 wind 9 14400 > th dose independent rect. 15 2
251 305.42 wind 9 43200 > th dose dependent rect. 17 13
266 305.69 wind 9 14400 < th dose independent rect. 15 2
273 305.73 temperature 25 720 < th dose dependent rect. 5 19
276 305.76 temperature 10 720 > th dose dependent rect. 14 14
334 306.44 wind 1 14400 < th dose dependent rect. 10 1
354 306.64 temperature 30 90 < th dose dependent rect. 23 20
356 306.65 temperature 10 1440 > th dose dependent rect. 11 1
372 306.80 temperature 30 90 < th dose dependent rect. 23 18
406 307.17 temperature 15 720 > th dose dependent sin 15 NA
430 307.48 temperature 30 1440 < th dose dependent rect. 17 2
442 307.56 temperature 10 720 > th dose dependent rect. 8 20
445 307.58 wind 1 14400 > th dose independent rect. 10 2
474 307.79 wind 9 43200 > th dose independent rect. 17 14
489 307.88 temperature 30 720 < th dose dependent rect. 9 16
530 308.19 wind 9 43200 < th dose independent rect. 18 11
532 308.20 temperature 30 720 < th dose dependent sin 16 NA
535 308.22 wind 9 43200 > th dose dependent rect. 17 9
542 308.25 wind 9 43200 > th dose dependent rect. 17 7
551 308.33 temperature 10 1440 > th dose dependent rect. 9 15
565 308.43 temperature 10 1440 > th dose dependent rect. 9 13
590 308.51 wind 9 43200 < th dose independent rect. 17 14
667 308.82 temperature 15 1440 > th dose dependent rect. 17 2
672 308.83 temperature 30 1440 < th dose dependent rect. 9 13
677 308.85 wind 9 43200 > th dose dependent rect. 20 10
686 308.89 wind 1 14400 < th dose independent rect. 10 1
737 309.07 temperature 10 1440 > th dose dependent sin 20 NA
839 309.38 temperature 15 1440 > th dose dependent rect. 16 5
941 309.65 wind 9 43200 > th dose independent rect. 20 10
943 309.66 humidity 50 14400 > th dose independent rect. 17 16
952 309.67 temperature 30 1440 < th dose dependent rect. 10 2
975 309.70 temperature 30 1440 < th dose dependent sin 20 NA