Os08g0333000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to F7O18.23 protein (SWP1) (Struwwelpeter 1 protein).
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Os08g0333000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to F7O18.23 protein (SWP1) (Struwwelpeter 1 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23 | 0.225 | 10.1 | 1.04 | 0.314 | 1.22 | -0.303 | 1.25 | 0.403 | 5.35 | 0.76 | 1442 | -- | -- |
| 23.7 | 0.227 | 10 | 1.13 | 0.299 | 0.878 | -0.429 | -- | 0.404 | 5.43 | 1.54 | 1436 | -- | -- |
| 23.23 | 0.224 | 10.1 | 1.04 | 0.312 | 1.23 | -- | 1.28 | 0.403 | 5.32 | 0.7596 | 1442 | -- | -- |
| 23.8 | 0.227 | 10 | 1.12 | 0.303 | 0.926 | -- | -- | 0.411 | 5.41 | 1.76 | 1442 | -- | -- |
| 28.24 | 0.247 | 10.1 | 1.06 | -- | 1.2 | -- | 1.09 | 0.413 | -- | 0.7857 | 1458 | -- | -- |
| 33.65 | 0.272 | 10.1 | 0.93 | 0.304 | -- | -0.377 | -- | 0.297 | 5.2 | -- | -- | -- | -- |
| 34.01 | 0.273 | 10.1 | 0.93 | 0.302 | -- | -- | -- | 0.299 | 5.25 | -- | -- | -- | -- |
| 27.27 | 0.243 | 10 | 1.09 | -- | 0.827 | -- | -- | 0.38 | -- | 0.43 | 3598 | -- | -- |
| 53.34 | 0.34 | 10 | -- | 0.248 | 0.447 | -- | -- | 0.327 | 4.93 | 20 | 9192 | -- | -- |
| 38.77 | 0.291 | 10.1 | 0.94 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 56.79 | 0.353 | 10.1 | -- | 0.318 | -- | -- | -- | 0.195 | 5.14 | -- | -- | -- | -- |
| 52.42 | 0.337 | 10 | -- | -- | 0.679 | -- | -- | 0.379 | -- | 9.988 | 9293 | -- | -- |
| 62.08 | 0.368 | 10.1 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.73 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 7 | 22.80 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 10 | 22.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 20 | 22.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 32 | 23.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 33 | 23.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 39 | 23.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 41 | 23.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 47 | 23.11 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 61 | 23.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 79 | 23.13 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 80 | 23.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 81 | 23.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 114 | 23.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 119 | 23.26 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 148 | 23.43 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 150 | 23.43 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 156 | 23.44 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 172 | 23.55 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 192 | 23.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 194 | 23.64 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 196 | 23.66 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 17 |
| 198 | 23.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 200 | 23.68 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 14 |
| 203 | 23.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 204 | 23.69 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 209 | 23.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 210 | 23.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 212 | 23.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 213 | 23.72 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 215 | 23.73 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 235 | 23.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 242 | 23.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 243 | 23.78 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 249 | 23.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 261 | 23.81 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 280 | 23.83 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 287 | 23.84 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 302 | 23.85 | humidity | 80.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 331 | 23.90 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 338 | 23.91 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 341 | 23.91 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 345 | 23.91 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 20 |
| 353 | 23.92 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 368 | 23.94 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 379 | 23.95 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 410 | 23.97 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 432 | 24.00 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 452 | 24.01 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 475 | 24.02 | radiation | 1.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 483 | 24.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 495 | 24.03 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 507 | 24.04 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 520 | 24.05 | radiation | 1.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 521 | 24.05 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 575 | 24.10 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 597 | 24.11 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 608 | 24.12 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 613 | 24.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 614 | 24.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 651 | 24.15 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 669 | 24.17 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 686 | 24.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 698 | 24.19 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 722 | 24.21 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 724 | 24.21 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 748 | 24.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 753 | 24.22 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 766 | 24.23 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 781 | 24.24 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 791 | 24.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 811 | 24.25 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 812 | 24.25 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 827 | 24.25 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 836 | 24.26 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 864 | 24.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 895 | 24.28 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 896 | 24.28 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |