Os08g0332600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os08g0332600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.38 | 0.435 | 6.4 | 0.188 | 0.451 | 2.5 | 1.14 | 0.262 | 0.371 | 4.65 | 10.9 | 345 | -- | -- |
| 87.35 | 0.435 | 6.4 | 0.196 | 0.436 | 2.45 | 1.13 | -- | 0.384 | 4.63 | 10.93 | 345 | -- | -- |
| 90.7 | 0.444 | 6.4 | 0.191 | 0.445 | 2.57 | -- | 0.0605 | 0.379 | 4.62 | 10.9 | 343 | -- | -- |
| 90.7 | 0.444 | 6.4 | 0.191 | 0.445 | 2.56 | -- | -- | 0.379 | 4.62 | 10.9 | 342 | -- | -- |
| 101.17 | 0.468 | 6.4 | 0.207 | -- | 2.52 | -- | 0.755 | 0.389 | -- | 10.92 | 324 | -- | -- |
| 99.03 | 0.467 | 6.4 | 0.153 | 0.395 | -- | 1.31 | -- | 0.368 | 4.68 | -- | -- | -- | -- |
| 103.53 | 0.476 | 6.4 | 0.146 | 0.404 | -- | -- | -- | 0.361 | 4.73 | -- | -- | -- | -- |
| 101.17 | 0.468 | 6.4 | 0.204 | -- | 2.36 | -- | -- | 0.389 | -- | 10.94 | 302 | -- | -- |
| 91.66 | 0.446 | 6.4 | -- | 0.449 | 2.51 | -- | -- | 0.359 | 4.6 | 10.91 | 345 | -- | -- |
| 112.17 | 0.495 | 6.41 | 0.161 | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
| 104.09 | 0.477 | 6.41 | -- | 0.406 | -- | -- | -- | 0.345 | 4.72 | -- | -- | -- | -- |
| 102.27 | 0.471 | 6.41 | -- | -- | 2.31 | -- | -- | 0.367 | -- | 11 | 285 | -- | -- |
| 112.85 | 0.496 | 6.41 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.32 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 2 |
| 2 | 80.32 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 2 |
| 5 | 80.35 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 13 | 80.35 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 51 | 87.32 | wind | 7 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 75 | 88.91 | wind | 9 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 76 | 89.01 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 79 | 89.04 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 105 | 89.72 | wind | 9 | 270 | > th | dose independent | rect. | 18 | 22 |
| 116 | 89.79 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 19 |
| 140 | 90.75 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 141 | 90.75 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 143 | 90.78 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 10 |
| 157 | 90.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 221 | 91.32 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 8 |
| 243 | 91.50 | wind | 9 | 270 | > th | dose dependent | sin | 2 | NA |
| 294 | 91.76 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 10 |
| 369 | 92.06 | temperature | 30 | 270 | > th | dose independent | sin | 6 | NA |
| 390 | 92.19 | wind | 9 | 270 | > th | dose independent | sin | 2 | NA |
| 392 | 92.20 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 408 | 92.43 | wind | 9 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 414 | 92.45 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 6 |
| 462 | 92.60 | wind | 7 | 720 | > th | dose independent | rect. | 8 | 1 |
| 464 | 92.62 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 493 | 92.69 | temperature | 15 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 495 | 92.69 | humidity | 80 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 516 | 92.74 | wind | 1 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 589 | 92.88 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 3 |
| 594 | 92.89 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 3 |
| 608 | 92.94 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 640 | 92.96 | wind | 9 | 270 | < th | dose independent | sin | 0 | NA |
| 646 | 92.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 652 | 92.98 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 657 | 92.99 | temperature | 30 | 270 | < th | dose independent | sin | 8 | NA |
| 659 | 93.01 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 683 | 93.05 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 688 | 93.06 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 691 | 93.06 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 715 | 93.09 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 726 | 93.11 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 5 |
| 746 | 93.12 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 837 | 93.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 839 | 93.14 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 7 |
| 857 | 93.14 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 925 | 93.16 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 976 | 93.19 | wind | 9 | 720 | < th | dose independent | rect. | 2 | 16 |
| 979 | 93.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 980 | 93.20 | humidity | 80 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 987 | 93.20 | wind | 5 | 720 | > th | dose dependent | rect. | 8 | 1 |