Os08g0331900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0331900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.92	(0.0332)	R²	:	0.198
β₁	:	0.527	(0.107)	R²_dD	:	0.0479	R²_D	:	-0.126
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	26.9	(2.52)	R²_dE	:	15.4	R²_E	:	-15.5
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	56	(5.24)	R²_dD*E	:	15.4	R²_D*E	:	-14.9
γ₁	:	0.097	(0.0581)	R²_dN8	:	0.00639	R²_N8	:	-0.119
σ	:	0.507
deviance	:	118.6
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	1016
memory length	:	1548
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
120.64	0.516	2.86	0.333	0.0578	16.5	-0.098	34.4	0.0825	23.9	1016	1562	--	--
146.58	0.568	2.73	0.114	0.00891	-0.0917	-0.386	--	0.072	22.4	1016	1562	--	--
119.91	0.51	2.86	0.331	0.0386	17.1	--	35.9	0.08	0.892	1016	1563	--	--
145.08	0.561	2.73	0.176	0.0215	0.621	--	--	0.101	22.8	1012	1622	--	--
118.6	0.507	2.92	0.527	--	26.9	--	56	0.097	--	1016	1548	--	--
146.6	0.568	2.73	0.113	0.00633	--	-0.39	--	0.0727	22.4	--	--	--	--
147.18	0.568	2.73	0.128	0.0266	--	--	--	0.0731	3.43	--	--	--	--
145.1	0.561	2.72	0.176	--	0.612	--	--	0.1	--	1012	1621	--	--
145.86	0.562	2.73	--	0.0494	0.62	--	--	0.0794	0.487	1012	1631	--	--
147.22	0.567	2.73	0.129	--	--	--	--	0.0738	--	--	--	--	--
147.61	0.568	2.73	--	0.0291	--	--	--	0.0589	3.41	--	--	--	--
145.9	0.563	2.73	--	--	0.553	--	--	0.0784	--	1012	1631	--	--
147.66	0.567	2.73	--	--	--	--	--	0.0595	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	117.92	atmosphere	1015	1440	> th	dose dependent	rect.	3	9
3	117.95	atmosphere	1015	1440	< th	dose independent	rect.	4	8
4	117.97	atmosphere	1015	1440	> th	dose independent	rect.	10	1
16	117.97	atmosphere	1015	1440	< th	dose independent	rect.	6	6
21	117.97	atmosphere	1015	1440	> th	dose dependent	rect.	10	1
38	118.03	atmosphere	1015	1440	< th	dose independent	rect.	9	3
40	118.04	atmosphere	1015	1440	< th	dose independent	rect.	11	1
48	118.12	atmosphere	1010	270	> th	dose dependent	rect.	6	1
67	118.34	atmosphere	1010	270	> th	dose independent	rect.	24	6
69	118.39	atmosphere	1010	270	> th	dose independent	rect.	5	1
86	118.61	atmosphere	1015	1440	< th	dose independent	rect.	24	12
93	118.88	atmosphere	1010	90	> th	dose dependent	rect.	8	1
162	120.42	atmosphere	1015	1440	> th	dose dependent	sin	3	NA
303	123.84	atmosphere	1015	1440	> th	dose independent	sin	3	NA
416	125.20	atmosphere	1015	1440	< th	dose independent	sin	3	NA
444	126.41	atmosphere	1015	1440	< th	dose independent	rect.	24	18
447	126.42	atmosphere	1015	1440	< th	dose independent	rect.	6	12
451	126.43	atmosphere	1015	1440	< th	dose independent	rect.	4	14
541	128.01	temperature	20	270	< th	dose dependent	rect.	6	1
624	132.15	atmosphere	1010	720	> th	dose dependent	rect.	23	3
656	132.25	atmosphere	1015	1440	> th	dose dependent	no	NA	NA
774	133.77	radiation	20	90	< th	dose independent	rect.	8	2
785	133.77	atmosphere	1010	720	> th	dose dependent	rect.	1	1
818	133.93	atmosphere	1010	90	> th	dose independent	rect.	8	1
819	133.93	atmosphere	1010	10	> th	dose independent	rect.	9	1
963	135.86	atmosphere	1015	1440	> th	dose independent	no	NA	NA