Os08g0331800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0331800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 448.23 | 0.995 | 5.49 | 0.00605 | 0.544 | 7.03 | 2.96 | 23.3 | -0.326 | 10.4 | 7.042 | 4498 | 21 | 5.93 |
| 571.35 | 1.12 | 5.33 | -1.03 | 0.586 | 0.201 | 2.99 | -- | -0.544 | 9.98 | 7.042 | 4498 | 21 | 5.93 |
| 477.68 | 1.02 | 5.48 | 0.103 | 0.646 | 6.97 | -- | 23.1 | -0.329 | 8.27 | 7.097 | 4516 | 21 | 5.97 |
| 488.21 | 1.03 | 5.32 | -0.847 | 0.539 | 2.02 | -- | -- | -0.347 | 9.23 | 4.805 | 2835 | 19.9 | 6.4 |
| 500.79 | 1.04 | 5.5 | 0.124 | -- | 7.09 | -- | 23.5 | -0.319 | -- | 7.088 | 4510 | 21 | 5.87 |
| 571.39 | 1.12 | 5.33 | -1.03 | 0.584 | -- | 3 | -- | -0.545 | 9.98 | -- | -- | -- | -- |
| 598.27 | 1.15 | 5.33 | -0.933 | 0.716 | -- | -- | -- | -0.549 | 7.78 | -- | -- | -- | -- |
| 501.81 | 1.04 | 5.26 | -0.614 | -- | 2.42 | -- | -- | -0.202 | -- | 4.729 | 2782 | 19.9 | 7.6 |
| 487.27 | 1.03 | 5.23 | -- | 0.562 | 2.29 | -- | -- | -0.169 | 8.65 | 4.9 | 6493 | 20.2 | 7.03 |
| 626.02 | 1.17 | 5.35 | -0.924 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 621.22 | 1.17 | 5.3 | -- | 0.71 | -- | -- | -- | -0.445 | 7.87 | -- | -- | -- | -- |
| 506.16 | 1.05 | 5.23 | -- | -- | 2.46 | -- | -- | -0.168 | -- | 4.9 | 6493 | 20.2 | 7.13 |
| 648.56 | 1.19 | 5.32 | -- | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 451.71 | wind | 7 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 2 | 451.77 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 3 | 451.94 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 4 | 454.59 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 5 | 454.84 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 7 | 455.77 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 9 | 455.90 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 16 | 457.30 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 18 | 457.69 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 27 | 458.66 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 29 | 458.96 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 32 | 459.02 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 35 | 459.06 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 49 | 460.36 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 50 | 460.40 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 54 | 460.47 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 62 | 460.69 | temperature | 20 | 14400 | < th | dose dependent | sin | 1 | NA |
| 93 | 461.91 | wind | 5 | 4320 | > th | dose independent | sin | 10 | NA |
| 102 | 462.32 | wind | 5 | 4320 | < th | dose independent | sin | 10 | NA |
| 108 | 462.56 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 135 | 463.47 | wind | 9 | 4320 | > th | dose independent | sin | 10 | NA |
| 157 | 464.08 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 16 |
| 171 | 464.52 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 192 | 464.92 | wind | 5 | 4320 | > th | dose dependent | sin | 9 | NA |
| 239 | 465.88 | wind | 9 | 4320 | > th | dose dependent | sin | 10 | NA |
| 250 | 466.14 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 256 | 466.21 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 257 | 466.24 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 272 | 466.44 | temperature | 20 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 280 | 466.51 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 408 | 468.18 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 440 | 468.53 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 483 | 469.15 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 510 | 469.57 | temperature | 20 | 14400 | < th | dose dependent | sin | 17 | NA |
| 569 | 470.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 571 | 470.33 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 586 | 470.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 615 | 471.04 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 730 | 472.54 | temperature | 20 | 14400 | < th | dose independent | sin | 2 | NA |
| 759 | 472.86 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 800 | 473.47 | temperature | 20 | 14400 | > th | dose independent | sin | 2 | NA |
| 825 | 473.78 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 863 | 473.97 | wind | 7 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 895 | 474.37 | wind | 7 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 929 | 474.60 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 947 | 474.76 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 9 |