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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0331000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.0613) R2 : 0.338
β1 : -1.28 (0.217) R2dD : 0.0661 R2D : 0.000209
β2 : 1.17 (0.146) R2dC : 0.095 R2C : 0.0663
β3 : 0.141 (0.274) R2dE : 0.000343 R2E : -0.0126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -15.7 (1.33) R2dD*E : 0.242 R2D*E : 0.179
γ1 : -0.178 (0.131) R2dN8 : 0.00382 R2N8 : -0.0123
σ : 1.05
deviance : 504.59
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_____
C
peak time of C : 5.47
E
wheather : radiation
threshold : 20.07
memory length : 4499
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 14.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
503.16 1.05 5.83 -1.37 1.17 0.0854 -0.993 -15.7 -0.181 5.15 20.07 4500 16.1 14.9
609.68 1.15 6.02 -0.844 1.15 -1.37 -0.774 -- -0.281 4.68 10.81 1583 17.1 15.6
504.59 1.05 5.83 -1.28 1.17 0.141 -- -15.7 -0.178 5.47 20.07 4499 16.1 14.9
591.96 1.13 6.04 -0.709 1.18 -1.66 -- -- -0.238 5.56 10.55 1590 16 16.4
576.62 1.12 5.83 -1.3 -- 0.151 -- -15.4 -0.131 -- 20.07 4499 16.1 14.9
657.24 1.2 6.1 -1.03 1.06 -- -1.57 -- -0.562 4.76 -- -- -- --
658.52 1.2 6.09 -1.02 1.11 -- -- -- -0.553 5.77 -- -- -- --
627.62 1.17 6.02 -0.632 -- -1.65 -- -- -0.277 -- 10.87 994 16.2 16.6
604.52 1.15 6.03 -- 1.15 -1.74 -- -- -0.112 5.76 10.69 1584 16.2 16.6
722.39 1.26 6.11 -0.985 -- -- -- -- -0.526 -- -- -- -- --
685.89 1.23 6.06 -- 1.09 -- -- -- -0.439 5.81 -- -- -- --
637.74 1.18 6.01 -- -- -1.7 -- -- -0.132 -- 11 991 16.1 16.7
747.95 1.28 6.08 -- -- -- -- -- -0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 515.51 temperature 20 14400 < th dose dependent rect. 2 20
3 515.71 temperature 20 14400 < th dose dependent rect. 3 15
14 516.07 temperature 20 14400 < th dose dependent sin 2 NA
21 516.21 radiation 1 14400 < th dose dependent rect. 4 1
54 517.15 temperature 20 14400 < th dose dependent rect. 7 23
62 517.36 temperature 20 14400 < th dose dependent no NA NA
64 517.36 temperature 20 14400 < th dose dependent rect. 20 23
66 517.42 temperature 20 14400 < th dose dependent rect. 15 23
99 517.69 radiation 20 4320 > th dose independent rect. 16 15
149 518.26 wind 9 43200 > th dose independent rect. 15 1
215 519.21 temperature 20 14400 < th dose independent rect. 3 15
238 519.57 temperature 20 14400 > th dose independent rect. 3 14
269 520.09 temperature 20 14400 < th dose dependent sin 14 NA
331 521.03 temperature 20 14400 < th dose independent sin 3 NA
334 521.04 radiation 10 14400 > th dose independent rect. 17 13
354 521.34 temperature 20 14400 > th dose independent rect. 3 1
370 521.59 temperature 20 14400 > th dose independent sin 3 NA
375 521.65 temperature 20 14400 < th dose independent rect. 3 1
427 522.53 radiation 20 4320 > th dose independent rect. 16 1
442 522.54 temperature 20 14400 < th dose dependent rect. 4 1
457 522.86 temperature 20 14400 > th dose independent rect. 3 5
469 522.96 wind 9 43200 < th dose independent rect. 15 1
689 526.90 temperature 20 14400 < th dose dependent rect. 23 2
753 528.42 humidity 70 43200 < th dose independent rect. 1 7
756 528.49 wind 9 14400 > th dose dependent rect. 15 2
761 528.61 radiation 1 14400 < th dose independent rect. 18 1
786 529.17 radiation 1 14400 < th dose independent rect. 18 6
795 529.39 wind 9 4320 > th dose independent rect. 17 18
833 530.22 temperature 20 14400 < th dose independent rect. 8 23
839 530.34 temperature 20 14400 < th dose independent no NA NA
843 530.40 wind 5 4320 < th dose independent rect. 20 9
852 530.55 temperature 20 14400 < th dose independent rect. 14 23
887 531.13 temperature 20 14400 > th dose independent rect. 9 23
888 531.15 wind 5 4320 > th dose independent rect. 20 9
894 531.22 temperature 20 14400 > th dose independent no NA NA
906 531.41 temperature 20 14400 > th dose independent rect. 15 23
909 531.43 temperature 20 14400 > th dose independent rect. 17 23
915 531.48 temperature 20 14400 < th dose independent rect. 6 23
922 531.61 wind 5 4320 > th dose independent sin 10 NA
952 531.84 wind 9 4320 < th dose independent rect. 17 18
993 532.13 wind 5 4320 < th dose independent sin 10 NA
995 532.17 wind 5 4320 > th dose independent rect. 20 15