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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0327700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant (LEA) group 1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0488) R2 : 0.0738
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.652 (0.123) R2dC : 0.0576 R2C : 0.0532
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.287 (0.102) R2dN8 : 0.0206 R2N8 : 0.0162
σ : 0.918
deviance : 385.29
__
_____
C
peak time of C : 20.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
363.27 0.895 3.29 0.876 0.639 -2.62 -1.45 18.6 -0.255 21 999.5 185 -- --
371.56 0.905 3.48 -0.177 0.648 0.507 -1.43 -- -0.262 21 999.5 185 -- --
370.35 0.896 3.28 0.946 0.654 -2.68 -- 19 -0.253 20.7 999.6 185 -- --
374.6 0.901 3.48 -0.15 0.646 0.682 -- -- -0.251 20.6 999.7 221 -- --
394.36 0.925 3.26 0.951 -- -2.69 -- 19.1 -0.26 -- 999.6 188 -- --
378.22 0.912 3.49 -0.0922 0.636 -- -1.46 -- -0.294 21 -- -- -- --
385.24 0.919 3.49 -0.0392 0.652 -- -- -- -0.291 20.5 -- -- -- --
398.17 0.929 3.46 -0.158 -- 0.683 -- -- -0.259 -- 999.8 234 -- --
375.17 0.902 3.47 -- 0.65 0.656 -- -- -0.236 20.6 999.7 221 -- --
409.05 0.945 3.47 -0.0418 -- -- -- -- -0.298 -- -- -- -- --
385.29 0.918 3.49 -- 0.652 -- -- -- -0.287 20.5 -- -- -- --
398.73 0.93 3.46 -- -- 0.662 -- -- -0.242 -- 999.7 221 -- --
409.09 0.944 3.47 -- -- -- -- -- -0.293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 350.20 humidity 90.0 90 > th dose dependent rect. 8 1
3 350.34 humidity 90.0 90 > th dose independent rect. 8 1
5 352.61 wind 5.0 10 > th dose independent rect. 10 1
9 352.61 wind 5.0 10 > th dose dependent rect. 10 1
13 352.84 wind 7.0 90 > th dose dependent rect. 8 1
14 353.24 wind 7.0 90 > th dose independent rect. 8 1
24 356.36 wind 9.0 90 > th dose dependent rect. 22 12
35 357.53 atmosphere 1000.0 90 < th dose independent rect. 14 20
42 358.11 atmosphere 995.0 90 > th dose dependent rect. 16 12
45 358.40 atmosphere 1005.0 90 > th dose independent rect. 16 12
47 358.76 atmosphere 1000.0 10 < th dose independent rect. 14 21
74 360.11 atmosphere 1000.0 90 > th dose independent rect. 19 9
76 360.37 atmosphere 1010.0 90 < th dose dependent rect. 15 11
104 360.90 atmosphere 1000.0 270 > th dose independent rect. 14 23
123 361.58 radiation 40.0 720 > th dose independent rect. 14 1
128 361.77 atmosphere 1000.0 270 > th dose independent rect. 15 21
158 362.04 atmosphere 1000.0 90 < th dose independent rect. 18 16
171 362.18 atmosphere 1000.0 10 < th dose independent rect. 19 16
187 362.34 atmosphere 1000.0 90 > th dose independent rect. 10 18
216 362.77 atmosphere 995.0 720 > th dose dependent rect. 16 1
219 362.83 wind 3.0 10 < th dose dependent rect. 20 1
224 362.93 atmosphere 1000.0 270 > th dose independent sin 14 NA
231 363.05 atmosphere 1000.0 720 > th dose independent rect. 16 2
232 363.06 humidity 90.0 90 > th dose independent rect. 18 3
235 363.08 atmosphere 1010.0 30 < th dose dependent rect. 15 20
240 363.12 atmosphere 1000.0 270 < th dose independent rect. 5 21
250 363.22 atmosphere 1000.0 90 < th dose independent rect. 23 11
255 363.27 wind 3.0 10 < th dose dependent rect. 17 5
263 363.34 wind 5.0 720 < th dose independent rect. 16 1
270 363.41 wind 5.0 720 < th dose dependent rect. 19 1
281 363.52 atmosphere 1000.0 30 > th dose dependent rect. 14 14
288 363.56 atmosphere 1005.0 90 < th dose independent rect. 14 12
291 363.57 atmosphere 1010.0 30 < th dose dependent rect. 17 18
304 363.68 wind 3.0 720 < th dose independent rect. 19 1
321 363.77 temperature 20.0 10 < th dose independent rect. 19 1
324 363.77 atmosphere 1000.0 720 < th dose independent rect. 22 1
333 363.81 atmosphere 1000.0 270 > th dose independent rect. 7 21
343 363.87 temperature 20.0 90 < th dose independent rect. 18 3
358 363.94 temperature 20.0 10 < th dose dependent rect. 20 1
365 363.99 wind 7.0 720 < th dose dependent rect. 16 1
368 364.01 atmosphere 1000.0 270 < th dose independent rect. 17 23
372 364.06 atmosphere 1000.0 720 > th dose independent rect. 16 6
381 364.09 wind 9.0 1440 < th dose independent rect. 17 12
401 364.16 atmosphere 1000.0 270 < th dose independent sin 15 NA
402 364.17 atmosphere 1000.0 270 < th dose independent no NA NA
420 364.28 wind 3.0 30 < th dose independent rect. 19 1
422 364.29 atmosphere 1000.0 1440 < th dose independent rect. 18 1
425 364.30 atmosphere 1000.0 270 > th dose independent no NA NA
428 364.30 radiation 30.0 720 > th dose dependent rect. 14 1
437 364.33 atmosphere 1000.0 1440 < th dose independent rect. 17 3
443 364.36 atmosphere 1000.0 1440 > th dose independent rect. 18 2
471 364.43 atmosphere 1005.0 10 < th dose dependent rect. 18 9
509 364.60 atmosphere 1000.0 90 < th dose dependent rect. 15 19
546 364.75 atmosphere 995.0 720 > th dose dependent rect. 16 5
548 364.77 atmosphere 1000.0 720 > th dose independent rect. 10 18
558 364.80 atmosphere 995.0 90 > th dose dependent rect. 10 18
561 364.83 radiation 20.0 720 < th dose independent rect. 16 1
578 364.88 atmosphere 1000.0 10 < th dose dependent rect. 14 21
589 364.91 temperature 25.0 90 < th dose dependent rect. 14 1
619 364.96 humidity 80.0 4320 > th dose independent rect. 18 1
651 365.09 atmosphere 1000.0 30 > th dose independent rect. 22 14
659 365.11 wind 9.0 1440 < th dose independent sin 13 NA
679 365.16 wind 9.0 1440 < th dose independent rect. 17 16
703 365.23 atmosphere 1000.0 10 > th dose independent rect. 17 19
711 365.25 wind 3.0 30 < th dose independent rect. 17 5
740 365.34 precipitation 0.1 4320 < th dose independent rect. 4 2
742 365.34 precipitation 0.1 4320 < th dose dependent rect. 4 2
747 365.36 precipitation 0.1 4320 > th dose dependent rect. 4 2
750 365.37 atmosphere 1010.0 30 < th dose dependent sin 15 NA
752 365.37 wind 5.0 720 < th dose dependent rect. 11 11
755 365.37 radiation 30.0 720 > th dose dependent rect. 13 19
762 365.39 wind 3.0 10 < th dose independent rect. 14 2
771 365.40 wind 5.0 720 < th dose dependent rect. 10 14
772 365.41 wind 9.0 1440 > th dose independent sin 14 NA
776 365.42 precipitation 0.1 4320 > th dose independent rect. 4 2
784 365.44 wind 3.0 720 < th dose independent rect. 10 14
794 365.46 humidity 80.0 4320 < th dose independent rect. 18 1
824 365.53 humidity 80.0 4320 < th dose independent rect. 17 3
829 365.54 atmosphere 1000.0 720 > th dose independent rect. 13 15
876 365.61 wind 3.0 720 < th dose independent rect. 11 11
882 365.62 temperature 20.0 270 > th dose independent rect. 12 11
888 365.63 temperature 30.0 90 < th dose dependent rect. 17 11
893 365.64 atmosphere 995.0 10 > th dose dependent sin 13 NA
906 365.68 humidity 70.0 4320 > th dose independent rect. 16 1
925 365.73 atmosphere 1000.0 720 > th dose independent rect. 17 16
943 365.76 wind 9.0 1440 > th dose dependent rect. 12 10
970 365.79 wind 9.0 1440 < th dose independent rect. 17 9
974 365.80 humidity 90.0 90 > th dose dependent rect. 18 3
987 365.83 wind 9.0 1440 > th dose dependent sin 15 NA
993 365.84 atmosphere 1000.0 30 > th dose independent rect. 13 23