FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0326700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0167) R2 : 9.52e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00733 (0.0352) R2dN8 : 0.000123 R2N8 : 9.52e-05
σ : 0.315
deviance : 45.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.44 0.31 3.06 -0.0102 0.128 -0.268 -0.125 0.173 -0.0332 7.93 70 4354 -- --
43.47 0.307 3.06 -0.00215 0.13 -0.261 -0.137 -- -0.0296 7.89 70 4409 -- --
43.45 0.307 3.05 -0.00573 0.129 -0.266 -- 0.21 -0.0408 8.54 71.97 4229 -- --
43.51 0.307 3.06 0.00402 0.129 -0.262 -- -- -0.0389 8.52 72 4235 -- --
44.35 0.31 3.06 -0.0153 -- -0.286 -- 0.243 -0.0459 -- 71.45 4352 -- --
44.48 0.313 3.05 0.00398 0.131 -- -0.133 -- 0.00572 7.99 -- -- -- --
44.53 0.313 3.05 0.000621 0.13 -- -- -- 0.00602 8.22 -- -- -- --
44.4 0.31 3.06 0.00922 -- -0.266 -- -- -0.0361 -- 71.91 4373 -- --
43.51 0.307 3.06 -- 0.133 -0.26 -- -- -0.0378 8.53 72 4235 -- --
45.47 0.315 3.05 0.0016 -- -- -- -- 0.00751 -- -- -- -- --
44.53 0.312 3.05 -- 0.13 -- -- -- 0.00595 8.22 -- -- -- --
44.4 0.31 3.06 -- -- -0.273 -- -- -0.0392 -- 71.8 4374 -- --
45.47 0.315 3.05 -- -- -- -- -- 0.00733 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.65 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 40.85 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 40.92 humidity 50.0 10 > th dose independent rect. 3 23
7 41.12 radiation 1.0 4320 < th dose dependent rect. 3 1
8 41.14 temperature 25.0 90 > th dose independent rect. 1 1
9 41.14 radiation 10.0 43200 < th dose dependent rect. 3 1
11 41.15 wind 9.0 1440 < th dose independent rect. 3 1
12 41.15 temperature 10.0 1440 > th dose independent rect. 3 1
15 41.15 temperature 30.0 1440 < th dose independent rect. 3 1
19 41.15 humidity 50.0 1440 > th dose independent rect. 3 1
28 41.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
29 41.15 radiation 1.0 1440 < th dose independent rect. 3 1
49 41.15 temperature 10.0 1440 > th dose independent rect. 4 23
67 41.15 atmosphere 1005.0 10 > th dose dependent rect. 2 2
70 41.17 temperature 20.0 30 > th dose dependent rect. 2 1
75 41.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
78 41.19 atmosphere 995.0 30 > th dose dependent rect. 2 1
80 41.20 wind 3.0 30 < th dose independent rect. 2 1
82 41.20 wind 3.0 30 < th dose dependent rect. 2 1
90 41.21 temperature 10.0 30 > th dose independent rect. 2 1
92 41.21 temperature 30.0 30 < th dose independent rect. 2 1
93 41.21 humidity 50.0 30 > th dose independent rect. 2 1
99 41.21 atmosphere 1010.0 30 < th dose independent rect. 2 1
101 41.21 radiation 1.0 30 < th dose independent rect. 2 1
106 41.21 precipitation 0.1 30 < th dose independent rect. 2 1
107 41.21 temperature 10.0 30 > th dose independent rect. 3 23
108 41.21 humidity 50.0 30 > th dose dependent rect. 2 1
112 41.21 radiation 1.0 30 < th dose dependent rect. 2 1
117 41.21 precipitation 0.1 30 < th dose dependent rect. 2 1
123 41.25 atmosphere 1015.0 30 < th dose dependent rect. 2 1
125 41.27 temperature 30.0 30 < th dose dependent rect. 2 1
126 41.28 wind 1.0 30 > th dose independent rect. 2 1
140 41.34 precipitation 0.1 30 < th dose independent rect. 3 23
143 41.34 precipitation 0.1 30 < th dose dependent rect. 3 23
192 41.77 wind 9.0 30 < th dose independent rect. 3 23
200 41.92 humidity 70.0 4320 > th dose independent rect. 22 5
209 42.07 humidity 70.0 4320 > th dose independent rect. 20 10
210 42.10 humidity 70.0 4320 > th dose independent rect. 20 6
217 42.14 humidity 70.0 4320 > th dose independent rect. 21 1
218 42.14 atmosphere 1010.0 10 < th dose independent rect. 3 23
249 42.21 humidity 90.0 90 < th dose independent rect. 2 1
260 42.29 atmosphere 995.0 720 > th dose independent rect. 7 8
265 42.32 humidity 50.0 4320 > th dose independent rect. 16 1
278 42.45 precipitation 0.1 720 < th dose independent rect. 19 8
279 42.45 precipitation 0.1 720 < th dose dependent rect. 19 8
281 42.47 precipitation 0.1 720 < th dose independent rect. 15 16
283 42.47 precipitation 0.1 720 < th dose dependent rect. 15 16
284 42.48 humidity 70.0 4320 < th dose independent rect. 20 1
293 42.48 wind 9.0 720 < th dose independent rect. 19 8
297 42.48 humidity 70.0 4320 < th dose dependent rect. 20 1
317 42.55 temperature 10.0 720 > th dose independent rect. 7 8
318 42.55 atmosphere 1015.0 720 < th dose independent rect. 7 8
319 42.55 temperature 10.0 720 > th dose independent rect. 15 16
322 42.56 temperature 10.0 720 > th dose independent rect. 19 8
323 42.56 temperature 30.0 720 < th dose independent rect. 19 8
324 42.56 humidity 50.0 720 > th dose independent rect. 19 8
325 42.56 atmosphere 995.0 720 > th dose independent rect. 19 8
326 42.56 radiation 1.0 720 < th dose independent rect. 19 8
331 42.56 temperature 10.0 720 > th dose independent rect. 3 16
332 42.56 radiation 1.0 720 < th dose dependent rect. 19 8
337 42.57 humidity 80.0 4320 > th dose independent rect. 3 8
341 42.58 radiation 1.0 720 < th dose independent rect. 8 1
342 42.58 atmosphere 995.0 720 > th dose independent rect. 23 16
343 42.58 radiation 1.0 720 < th dose dependent rect. 8 1
349 42.61 wind 9.0 4320 > th dose dependent rect. 14 1
355 42.63 humidity 80.0 4320 < th dose independent rect. 3 8
364 42.66 humidity 50.0 30 > th dose dependent rect. 3 23
367 42.68 humidity 50.0 4320 > th dose dependent rect. 4 5
374 42.70 wind 9.0 30 < th dose dependent rect. 3 23
377 42.71 humidity 90.0 4320 < th dose dependent rect. 3 6
402 42.76 atmosphere 995.0 30 > th dose dependent rect. 2 12
415 42.79 atmosphere 1010.0 10 < th dose independent rect. 4 15
416 42.79 atmosphere 995.0 720 > th dose independent rect. 3 16
418 42.79 humidity 90.0 4320 < th dose dependent rect. 6 2
423 42.80 temperature 30.0 30 < th dose independent rect. 3 23
431 42.82 humidity 70.0 4320 < th dose independent rect. 20 13
432 42.82 radiation 40.0 720 < th dose independent rect. 15 16
440 42.83 atmosphere 1010.0 10 > th dose dependent rect. 12 1
482 42.84 precipitation 0.1 720 < th dose independent rect. 7 8
487 42.84 precipitation 0.1 720 < th dose dependent rect. 7 8
495 42.86 atmosphere 1010.0 10 < th dose independent rect. 4 9
516 42.88 atmosphere 1000.0 720 > th dose independent rect. 3 8
517 42.88 precipitation 0.1 720 < th dose independent rect. 15 8
519 42.88 atmosphere 1010.0 10 < th dose independent rect. 4 11
527 42.88 precipitation 0.1 720 < th dose dependent rect. 15 8
579 42.90 wind 9.0 720 < th dose independent rect. 3 8
581 42.90 wind 9.0 720 < th dose independent rect. 15 16
588 42.90 atmosphere 995.0 10 > th dose dependent rect. 2 14
589 42.90 radiation 40.0 30 < th dose dependent rect. 3 23
591 42.91 humidity 60.0 720 > th dose independent rect. 3 8
610 42.92 humidity 90.0 90 < th dose independent rect. 1 6
630 42.93 temperature 10.0 720 > th dose independent rect. 15 8
632 42.93 temperature 10.0 720 > th dose independent rect. 23 16
659 42.94 atmosphere 995.0 720 > th dose independent rect. 15 16
665 42.94 radiation 10.0 30 < th dose dependent rect. 3 23
667 42.95 temperature 10.0 720 > th dose independent rect. 3 8
672 42.95 temperature 10.0 720 > th dose independent rect. 11 16
683 42.96 precipitation 0.1 720 < th dose independent rect. 11 16
688 42.96 precipitation 0.1 720 < th dose dependent rect. 11 16
690 42.97 wind 9.0 4320 > th dose independent rect. 14 1
693 42.97 radiation 10.0 30 < th dose independent rect. 3 23
702 42.98 humidity 70.0 4320 > th dose independent rect. 24 9
711 42.98 atmosphere 1005.0 10 > th dose dependent rect. 2 6
722 42.99 atmosphere 1015.0 720 < th dose independent rect. 3 16
744 43.01 wind 1.0 30 < th dose independent rect. 21 6
758 43.02 atmosphere 1010.0 30 > th dose dependent sin 0 NA
765 43.03 radiation 40.0 30 < th dose independent rect. 3 23
788 43.04 atmosphere 1000.0 10 > th dose independent rect. 14 12
902 43.05 humidity 50.0 4320 < th dose independent rect. 16 1
913 43.05 wind 1.0 10 < th dose independent rect. 6 21