Os08g0323700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0323700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.52 | 0.228 | 11.2 | 0.385 | 0.216 | 0.584 | -0.252 | -1.4 | 0.324 | 17.9 | 92.76 | 312 | -- | -- |
| 25.05 | 0.233 | 11.2 | 0.361 | 0.251 | 0.576 | 0.274 | -- | 0.322 | 18.2 | 92.36 | 335 | -- | -- |
| 23.55 | 0.226 | 11.2 | 0.373 | 0.204 | 0.617 | -- | -1.35 | 0.313 | 17.8 | 93.32 | 291 | -- | -- |
| 25.22 | 0.234 | 11.2 | 0.351 | 0.238 | 0.557 | -- | -- | 0.317 | 18 | 92.58 | 322 | -- | -- |
| 24.96 | 0.233 | 11.2 | 0.378 | -- | 0.638 | -- | -2.22 | 0.276 | -- | 94.58 | 244 | -- | -- |
| 28.74 | 0.251 | 11.2 | 0.385 | 0.0774 | -- | 0.0809 | -- | 0.249 | 18.9 | -- | -- | -- | -- |
| 28.75 | 0.251 | 11.2 | 0.384 | 0.0779 | -- | -- | -- | 0.249 | 18.7 | -- | -- | -- | -- |
| 26.53 | 0.24 | 11.2 | 0.38 | -- | 0.872 | -- | -- | 0.268 | -- | 94.87 | 238 | -- | -- |
| 28.41 | 0.248 | 11.2 | -- | 0.239 | 0.586 | -- | -- | 0.287 | 18 | 92.4 | 309 | -- | -- |
| 29.07 | 0.252 | 11.2 | 0.382 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 32.64 | 0.267 | 11.2 | -- | 0.0734 | -- | -- | -- | 0.206 | 19 | -- | -- | -- | -- |
| 30.31 | 0.256 | 11.2 | -- | -- | 0.816 | -- | -- | 0.233 | -- | 94.77 | 253 | -- | -- |
| 32.93 | 0.268 | 11.2 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 22.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 22.77 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 4 | 22.78 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 16 | 23.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 19 | 23.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 67 | 23.90 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 71 | 23.92 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 75 | 24.03 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 76 | 24.04 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 108 | 24.41 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 113 | 24.46 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 115 | 24.49 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 143 | 24.58 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 153 | 24.60 | humidity | 90.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 168 | 24.65 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 178 | 24.68 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 180 | 24.68 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 182 | 24.68 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 234 | 24.68 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 236 | 24.68 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 238 | 24.68 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 292 | 24.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 339 | 24.79 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 360 | 24.83 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 361 | 24.83 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 369 | 24.85 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 384 | 24.91 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 392 | 24.95 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 405 | 24.97 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 431 | 25.03 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 512 | 25.22 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 513 | 25.23 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 562 | 25.28 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 564 | 25.28 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 569 | 25.29 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 616 | 25.31 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 709 | 25.39 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 784 | 25.44 | wind | 7.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 809 | 25.46 | wind | 7.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 818 | 25.47 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 828 | 25.47 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 877 | 25.52 | wind | 7.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 880 | 25.52 | wind | 7.0 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 892 | 25.53 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 924 | 25.55 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 951 | 25.56 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 22 | 10 |
| 964 | 25.57 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 2 |