Os08g0322600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGT-2.
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Os08g0322600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PGT-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.04 | 0.412 | 6.79 | -0.0356 | 0.659 | -0.744 | -0.168 | -0.462 | 0.0352 | 11.1 | 33.41 | 2196 | -- | -- |
| 77.2 | 0.409 | 6.8 | -0.147 | 0.656 | -0.729 | -0.212 | -- | 0.00978 | 11.2 | 35.3 | 2313 | -- | -- |
| 77.15 | 0.409 | 6.79 | -0.038 | 0.663 | -0.737 | -- | -0.482 | 0.0386 | 11.2 | 50.76 | 2258 | -- | -- |
| 77.36 | 0.41 | 6.81 | -0.155 | 0.663 | -0.73 | -- | -- | 0.00741 | 11.2 | 35.75 | 2313 | -- | -- |
| 89.34 | 0.443 | 6.82 | -0.0715 | -- | -1.14 | -- | -0.26 | 0.00686 | -- | 50.76 | 2258 | -- | -- |
| 87.36 | 0.438 | 6.77 | 0.125 | 0.577 | -- | -0.228 | -- | 0.156 | 11.2 | -- | -- | -- | -- |
| 87.58 | 0.438 | 6.77 | 0.116 | 0.578 | -- | -- | -- | 0.155 | 11.2 | -- | -- | -- | -- |
| 89.36 | 0.442 | 6.82 | -0.108 | -- | -1.07 | -- | -- | -0.00567 | -- | 33.12 | 4534 | -- | -- |
| 77.91 | 0.411 | 6.8 | -- | 0.653 | -0.669 | -- | -- | 0.0325 | 11.2 | 35.31 | 2268 | -- | -- |
| 108.44 | 0.487 | 6.79 | 0.102 | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
| 87.93 | 0.439 | 6.78 | -- | 0.576 | -- | -- | -- | 0.142 | 11.2 | -- | -- | -- | -- |
| 89.65 | 0.442 | 6.82 | -- | -- | -1.04 | -- | -- | 0.0102 | -- | 33.12 | 4534 | -- | -- |
| 108.71 | 0.487 | 6.79 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.21 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 75.62 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 6 | 75.77 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 9 | 75.79 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 10 | 75.80 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 18 | 75.98 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 22 | 76.02 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 39 | 76.06 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 86 | 76.25 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 98 | 76.28 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 113 | 76.32 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 9 | 11 |
| 166 | 76.40 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 8 |
| 173 | 76.41 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 180 | 76.42 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 181 | 76.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 200 | 76.45 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 265 | 76.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 266 | 76.52 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 286 | 76.54 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 303 | 76.55 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 311 | 76.56 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 333 | 76.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 338 | 76.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 366 | 76.61 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 447 | 76.67 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 479 | 76.71 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 480 | 76.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 543 | 76.75 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 557 | 76.76 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 567 | 76.76 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 670 | 76.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 672 | 76.82 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 785 | 76.87 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 861 | 76.90 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 865 | 76.91 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 917 | 76.93 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |