FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0316900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.4 (0.0309) R2 : 0.305
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.772 (0.0738) R2dC : 0.167 R2C : 0.133
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.607 (0.065) R2dN8 : 0.172 R2N8 : 0.138
σ : 0.583
deviance : 155.1
__
_____
C
peak time of C : 12.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.73 0.547 5.39 0.494 0.773 1.34 0.416 1.7 -0.481 12.8 1015 4620 -- --
138.05 0.547 5.36 0.585 0.717 0.82 0.156 -- -0.481 12.6 1014 4681 -- --
136.16 0.543 5.39 0.517 0.767 1.86 -- 2.75 -0.479 12.8 1016 4570 -- --
137.95 0.547 5.37 0.573 0.772 0.726 -- -- -0.459 12.8 1014 4727 -- --
172.95 0.612 5.41 0.501 -- 2.02 -- 2.88 -0.495 -- 1016 4534 -- --
149.1 0.572 5.39 0.443 0.78 -- 0.353 -- -0.558 12.9 -- -- -- --
149.63 0.573 5.38 0.456 0.78 -- -- -- -0.556 12.8 -- -- -- --
175.21 0.616 5.38 0.52 -- 0.772 -- -- -0.473 -- 1014 4479 -- --
145.79 0.562 5.38 -- 0.762 0.682 -- -- -0.533 12.7 1014 4395 -- --
187.58 0.64 5.4 0.427 -- -- -- -- -0.57 -- -- -- -- --
155.1 0.583 5.4 -- 0.772 -- -- -- -0.607 12.8 -- -- -- --
181.93 0.628 5.39 -- -- 0.748 -- -- -0.544 -- 1014 4219 -- --
192.39 0.647 5.41 -- -- -- -- -- -0.618 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.84 wind 3.0 14400 < th dose dependent rect. 5 2
4 125.79 wind 3.0 14400 < th dose independent rect. 5 2
7 126.52 wind 3.0 14400 > th dose independent rect. 5 2
20 127.59 humidity 80.0 14400 > th dose independent rect. 6 1
24 127.93 humidity 80.0 14400 < th dose independent rect. 6 1
34 128.29 wind 3.0 14400 < th dose dependent rect. 4 7
36 128.35 wind 3.0 14400 < th dose independent rect. 22 10
43 128.49 precipitation 0.1 14400 > th dose dependent rect. 4 4
44 128.49 wind 3.0 14400 < th dose dependent rect. 21 11
45 128.50 humidity 90.0 4320 > th dose dependent rect. 8 1
52 128.63 wind 1.0 14400 > th dose dependent rect. 5 2
55 128.71 wind 3.0 14400 < th dose independent rect. 1 7
59 128.73 precipitation 0.1 14400 > th dose independent rect. 4 4
66 128.81 wind 3.0 14400 > th dose independent rect. 22 10
75 128.89 wind 1.0 14400 < th dose independent rect. 4 9
77 128.94 precipitation 0.1 14400 < th dose independent rect. 4 4
78 128.94 precipitation 0.1 14400 < th dose dependent rect. 4 4
79 128.95 wind 3.0 1440 < th dose independent rect. 2 1
88 129.03 precipitation 0.1 4320 > th dose independent rect. 7 1
89 129.03 precipitation 0.1 4320 > th dose dependent rect. 7 1
91 129.05 precipitation 0.1 14400 > th dose dependent rect. 21 2
101 129.16 wind 3.0 14400 > th dose independent rect. 1 7
110 129.20 precipitation 0.1 14400 > th dose independent rect. 4 2
117 129.24 precipitation 0.1 14400 > th dose dependent rect. 4 2
120 129.25 wind 3.0 14400 < th dose dependent rect. 1 7
122 129.27 wind 3.0 14400 < th dose dependent sin 7 NA
129 129.34 precipitation 0.1 14400 < th dose independent rect. 4 2
132 129.34 precipitation 0.1 14400 < th dose dependent rect. 4 2
152 129.51 humidity 80.0 1440 < th dose independent rect. 11 1
158 129.54 wind 3.0 1440 > th dose independent rect. 2 1
164 129.56 wind 1.0 14400 > th dose independent rect. 4 8
170 129.58 precipitation 0.1 4320 < th dose independent rect. 7 1
171 129.58 precipitation 0.1 4320 < th dose dependent rect. 7 1
189 129.69 wind 9.0 14400 < th dose independent rect. 10 3
220 129.88 precipitation 0.1 14400 > th dose independent rect. 21 2
221 129.88 precipitation 0.1 14400 < th dose independent rect. 21 2
222 129.88 precipitation 0.1 14400 < th dose dependent rect. 21 2
253 130.04 radiation 1.0 4320 < th dose dependent rect. 7 2
256 130.07 wind 9.0 14400 < th dose independent rect. 6 7
262 130.10 wind 1.0 14400 < th dose independent rect. 4 13
266 130.13 wind 1.0 14400 < th dose dependent rect. 4 13
279 130.19 precipitation 0.1 4320 > th dose independent rect. 4 6
282 130.20 precipitation 0.1 14400 > th dose dependent rect. 17 1
288 130.22 humidity 80.0 1440 > th dose independent rect. 11 1
298 130.28 wind 3.0 14400 < th dose independent rect. 1 1
308 130.31 radiation 1.0 4320 < th dose independent rect. 7 2
310 130.31 wind 3.0 14400 < th dose dependent rect. 22 4
311 130.32 wind 3.0 14400 < th dose independent sin 8 NA
314 130.34 wind 1.0 14400 > th dose independent rect. 4 13
322 130.37 precipitation 0.1 4320 > th dose dependent rect. 4 6
329 130.41 radiation 1.0 4320 > th dose independent rect. 7 2
359 130.52 wind 1.0 14400 > th dose dependent rect. 22 10
380 130.63 wind 3.0 14400 < th dose dependent rect. 1 1
410 130.76 precipitation 0.1 4320 < th dose independent rect. 4 6
411 130.76 precipitation 0.1 4320 < th dose dependent rect. 4 6
439 130.87 wind 3.0 14400 > th dose independent sin 8 NA
450 130.89 wind 1.0 14400 < th dose independent sin 4 NA
463 130.94 wind 3.0 14400 > th dose independent rect. 1 1
476 130.98 wind 1.0 14400 < th dose dependent rect. 4 17
492 131.05 radiation 1.0 4320 > th dose independent rect. 7 5
511 131.10 radiation 1.0 4320 < th dose independent rect. 7 5
559 131.28 wind 3.0 14400 < th dose independent rect. 23 4
569 131.30 wind 1.0 14400 < th dose dependent sin 2 NA
603 131.41 humidity 90.0 14400 < th dose dependent rect. 2 1
606 131.42 wind 9.0 14400 > th dose independent rect. 10 2
612 131.43 wind 1.0 14400 > th dose independent sin 4 NA
634 131.48 wind 1.0 14400 > th dose dependent rect. 1 7
637 131.49 precipitation 0.1 4320 > th dose dependent rect. 4 9
642 131.51 wind 1.0 14400 < th dose independent rect. 1 16
643 131.51 wind 1.0 14400 < th dose independent rect. 4 19
656 131.55 wind 1.0 14400 > th dose dependent rect. 1 1
659 131.56 precipitation 0.1 4320 > th dose independent rect. 4 9
662 131.56 radiation 1.0 4320 < th dose dependent rect. 7 5
675 131.60 precipitation 0.1 14400 > th dose independent rect. 17 1
721 131.75 precipitation 0.1 4320 < th dose independent rect. 4 9
725 131.75 precipitation 0.1 4320 < th dose dependent rect. 4 9
742 131.79 wind 1.0 14400 > th dose independent rect. 1 16
769 131.84 wind 1.0 14400 < th dose independent rect. 1 23
808 131.94 wind 9.0 14400 > th dose independent rect. 6 6
849 132.01 wind 3.0 14400 > th dose independent rect. 23 4
852 132.02 humidity 80.0 14400 > th dose independent rect. 2 2
863 132.04 wind 1.0 14400 < th dose independent rect. 22 19
903 132.12 wind 1.0 14400 < th dose independent rect. 16 21
913 132.15 wind 1.0 14400 < th dose independent rect. 16 19
935 132.21 radiation 1.0 1440 > th dose independent rect. 7 8
942 132.22 radiation 1.0 1440 < th dose independent rect. 7 8
948 132.23 precipitation 0.1 14400 < th dose independent rect. 17 1
953 132.23 precipitation 0.1 14400 < th dose dependent rect. 17 1
959 132.24 wind 9.0 14400 < th dose independent rect. 2 11