Os08g0315200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retrotransposon gag protein family protein.
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Os08g0315200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retrotransposon gag protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.6 | 0.535 | 3.43 | 1.96 | 0.142 | -1.24 | 0.072 | 15.1 | -0.221 | 11.5 | 30.21 | 4229 | -- | -- |
| 144.15 | 0.563 | 3.75 | -0.392 | 0.246 | 0.913 | 0.286 | -- | -0.43 | 4.42 | 9.722 | 47520 | -- | -- |
| 129.58 | 0.53 | 3.44 | 1.94 | 0.142 | -1.26 | -- | 15.1 | -0.237 | 11.6 | 30.43 | 4247 | -- | -- |
| 144.08 | 0.563 | 3.75 | -0.38 | 0.251 | 0.762 | -- | -- | -0.434 | 4.09 | 18.52 | 47520 | -- | -- |
| 130.76 | 0.533 | 3.43 | 1.99 | -- | -1.31 | -- | 15.5 | -0.229 | -- | 30.76 | 4247 | -- | -- |
| 152.07 | 0.578 | 3.72 | -0.216 | 0.116 | -- | 0.0425 | -- | -0.305 | 9.76 | -- | -- | -- | -- |
| 152.07 | 0.577 | 3.72 | -0.214 | 0.115 | -- | -- | -- | -0.304 | 9.82 | -- | -- | -- | -- |
| 146.53 | 0.566 | 3.74 | -0.327 | -- | 0.548 | -- | -- | -0.392 | -- | 18.52 | 47520 | -- | -- |
| 143.72 | 0.558 | 3.72 | -- | 0.0942 | 0.422 | -- | -- | -0.179 | 10.7 | 28.68 | 4241 | -- | -- |
| 152.86 | 0.578 | 3.72 | -0.216 | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
| 153.28 | 0.579 | 3.72 | -- | 0.116 | -- | -- | -- | -0.281 | 9.96 | -- | -- | -- | -- |
| 143.49 | 0.558 | 3.71 | -- | -- | 0.548 | -- | -- | -0.236 | -- | 27.07 | 4193 | -- | -- |
| 154.09 | 0.579 | 3.72 | -- | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 4 | 127.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 5 | 127.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 23 | 127.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 26 | 127.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 41 | 127.78 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 56 | 127.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 106 | 128.10 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 123 | 128.21 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 125 | 128.25 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 169 | 128.53 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 232 | 128.73 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 368 | 129.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 418 | 129.90 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 555 | 130.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 624 | 130.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 643 | 130.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 675 | 131.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 792 | 131.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 890 | 132.28 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 923 | 132.36 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 948 | 132.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 952 | 132.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 971 | 132.47 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |